Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1125
         (693 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    29   0.48 
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    29   0.64 
SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe...    27   2.6  
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F...    27   3.4  
SPAC27F1.07 |||dolichyl-diphospho-oligosaccharide-protein glycos...    26   4.5  
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   5.9  
SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated |Schizosaccharom...    25   7.9  

>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 682

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 27/104 (25%), Positives = 39/104 (37%), Gaps = 9/104 (8%)
 Frame = -2

Query: 620 SCRSRTKRNRQDFTARKIRGRPENAGPDPVRNVRRFSQCHIKYIQFLRPHYIKI------ 459
           SC      +    T+      P +  PDPV  +   S  H+       PH+  +      
Sbjct: 137 SCLLSADNSSSSTTSNPNVAPPISTLPDPVATISSSSSSHLDMGAIHPPHHSSLPPHMGV 196

Query: 458 --LTR*NEHNARTS-TRPGTGRIRFPSKPDTPRSSEPILIPKLR 336
              T  + HNA +S T P +G   + S P  P   +P  IP  R
Sbjct: 197 DPSTMADAHNAHSSLTPPQSG---YSSMPSLPYLQQPFQIPSQR 237


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1142

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 395 SGCGRCRVWSMFVRYVRFSE 454
           +GCG+  VW  +VR+V F E
Sbjct: 108 NGCGKSYVWPSYVRFVDFDE 127


>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -2

Query: 578 ARKIRGRPENAGPDPVRNVRRFSQ 507
           AR I GRPEN G   ++N+ R S+
Sbjct: 214 ARTIPGRPENGGNCDIKNLSRGSK 237


>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
           Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = -2

Query: 257 GTNRRDISTYIPHLNFQGPQRVSGHRRKCGALRVPNHISL 138
           GT++ +IST +P      P++VSGH     A R+P+  S+
Sbjct: 374 GTSQSNISTPLPEPTPGQPRKVSGHNPP-SARRLPSASSV 412


>SPAC27F1.07 |||dolichyl-diphospho-oligosaccharide-protein
           glycosyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 450

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = +3

Query: 516 SSYVSDWIRTRVLRPSADLPSRKVLSVSFRARSARFCTTAVQRSAQNWHGQGN 674
           S Y +D  RTR++ PSA + +    ++       R   T V  S +   G+ N
Sbjct: 145 SPYTTDLQRTRLILPSAKIDTYTTYNIDGAELPNRVGNTLVYESRETITGEDN 197


>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 121

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
 Frame = -1

Query: 174 MRCSSRSEPYLPSI-GFHGTRTLRQKRKLFPDLSAASSGHFGLPRRT 37
           MR +   E Y+  + G H   T  Q   LF D     + H  L RRT
Sbjct: 1   MRPAKSVEGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRT 47


>SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 233

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -1

Query: 432 TNIDQTRHRPHPLPVQTRHAPV 367
           +N+D  +  PHP P Q    PV
Sbjct: 100 SNLDSVKSLPHPWPFQKESRPV 121


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,900,324
Number of Sequences: 5004
Number of extensions: 61213
Number of successful extensions: 193
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)