Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1125
(693 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g28990.1 68415.m03526 leucine-rich repeat protein kinase, put... 33 0.18
At1g50260.1 68414.m05635 C2 domain-containing protein low simila... 30 1.7
At1g76965.1 68414.m08961 glycine-rich protein 29 2.2
At2g02800.2 68415.m00225 protein kinase (APK2b) identical to pro... 29 2.9
At2g02800.1 68415.m00224 protein kinase (APK2b) identical to pro... 29 2.9
At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to ... 29 3.9
At5g42370.1 68418.m05159 expressed protein 29 3.9
At3g13320.1 68416.m01677 calcium exchanger (CAX2) almost identic... 29 3.9
At3g60520.1 68416.m06769 expressed protein 28 5.1
At1g72520.1 68414.m08386 lipoxygenase, putative similar to lipox... 28 5.1
At5g45730.1 68418.m05622 DC1 domain-containing protein contains ... 27 8.9
At5g22390.1 68418.m02612 expressed protein 27 8.9
At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical... 27 8.9
>At2g28990.1 68415.m03526 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 884
Score = 33.1 bits (72), Expect = 0.18
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = +1
Query: 523 TFRTGSGPAFSGLPRIFLAVKSCRFRFVRDRHDSVRPPFNGQLRTGTDKGIRLSN*N 693
T+ T SG R++L+ R+ D HD + PFNG T + ++N N
Sbjct: 179 TYVTQSGSLMMSF-RVYLSNSDASIRYADDVHDRIWSPFNGSSHTHITTDLNINNSN 234
>At1g50260.1 68414.m05635 C2 domain-containing protein low
similarity to CLB1 [Lycopersicon esculentum] GI:2789434;
contains Pfam profile PF00168: C2 domain
Length = 675
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +3
Query: 540 RTRVLRPSADLPSRKVLSVSFRARSARFCTTAVQRSAQN 656
R+RVLRPS + + + +S FR S T R A N
Sbjct: 37 RSRVLRPSVKISNFRFISCGFRGNSKNLRLTDSSRKAAN 75
>At1g76965.1 68414.m08961 glycine-rich protein
Length = 158
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -2
Query: 416 PGTGRIRFPSKPDTPRSSEPILIPKLRIQFAD 321
PG + FP KP+ P P +P+L + F D
Sbjct: 93 PGAAIVVFPKKPEEPVKVVPTPMPQLNLFFGD 124
>At2g02800.2 68415.m00225 protein kinase (APK2b) identical to
protein kinase APK2b [Arabidopsis thaliana]
gi|2852449|dbj|BAA24695
Length = 426
Score = 29.1 bits (62), Expect = 2.9
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = -2
Query: 482 LRPHYIKILTR*NEHNARTSTRPGTGRIRFPSKPDTPRSSEPILIPKLRIQFA-DFPYLH 306
LRP ++L + ++ ST+PGTG ++ D+PR S ++ K +++ D P LH
Sbjct: 352 LRPKMSEVLAKLDQLE---STKPGTGVGNRQAQIDSPRGSNGSIVQKSPRRYSYDRPLLH 408
>At2g02800.1 68415.m00224 protein kinase (APK2b) identical to
protein kinase APK2b [Arabidopsis thaliana]
gi|2852449|dbj|BAA24695
Length = 426
Score = 29.1 bits (62), Expect = 2.9
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = -2
Query: 482 LRPHYIKILTR*NEHNARTSTRPGTGRIRFPSKPDTPRSSEPILIPKLRIQFA-DFPYLH 306
LRP ++L + ++ ST+PGTG ++ D+PR S ++ K +++ D P LH
Sbjct: 352 LRPKMSEVLAKLDQLE---STKPGTGVGNRQAQIDSPRGSNGSIVQKSPRRYSYDRPLLH 408
>At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to
autophagy 7 [Arabidopsis thaliana] GI:19912147; contains
Pfam profile PF00899: ThiF family
Length = 697
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = -2
Query: 203 PQRVSGHRRKCGALRVPNHISLL*DSMELERSGRKENSSRTSRRR 69
P ++G CG +V NH++LL +S+ L+ ++S +R +
Sbjct: 42 PISITGFYGPCGHPQVSNHLTLLSESLPLDEQSLIASTSHGNRNK 86
>At5g42370.1 68418.m05159 expressed protein
Length = 447
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -3
Query: 142 PFYRIPWNSNAQAEKKTLPGPLGGVFRPL-WVTPSNTR 32
P Y + + Q+ +K +P PL + R L W TPS R
Sbjct: 285 PLYDVTSSGLVQSVEKVVPRPLRSIVRLLFWYTPSTMR 322
>At3g13320.1 68416.m01677 calcium exchanger (CAX2) almost identical
to low affinity calcium antiporter CAX2 (GI:1488267)
[Arabidopsis thaliana]; Ca2+:Cation Antiporter (CaCA)
Family member PMID:11500563
Length = 441
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Frame = +2
Query: 5 SIIVPSSLKTSVRRGNPKWPEDAAERSGKSFLFC--LSVRVPWNPI 136
S++ SL TS + PK P+++ S K +FC L++ +P+ P+
Sbjct: 41 SLMEQGSLSTSFPQHTPKAPKNSVLNSIKIVIFCNKLNLLLPFGPL 86
>At3g60520.1 68416.m06769 expressed protein
Length = 129
Score = 28.3 bits (60), Expect = 5.1
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -3
Query: 370 GPQSQSLFRSYGSNLPTSLTYIILSTRGSSPWRPAADMGRTGATSPR 230
G S+ +RS S+ + ++ SS PAAD G+TG SPR
Sbjct: 69 GGSSKRSYRSEYSSPHHQIKQQEINQTTSSSIPPAADKGKTGVPSPR 115
>At1g72520.1 68414.m08386 lipoxygenase, putative similar to
lipoxygenase gi:1495804 [Solanum tuberosum], gi:1654140
[Lycopersicon esculentum], GB:CAB56692 [Arabidopsis
thaliana]
Length = 926
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -1
Query: 198 ESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQK 100
+S + P R ++PYLPS G RTLR+K
Sbjct: 215 QSQKDHPSKRILFTNQPYLPSETPSGLRTLREK 247
>At5g45730.1 68418.m05622 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 519
Score = 27.5 bits (58), Expect = 8.9
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Frame = -1
Query: 393 PVQTRHAPVLRANP----YSEVTDPICRLPLPTLFYRLEALHLGDLLRIWDEPA 244
P +RH P+ + +P Y++ CR PL L Y + LR W PA
Sbjct: 68 PCHSRH-PLKKVSPETIDYTDGKCQFCRSPLVDLMYHCSICNFSVDLRCWLNPA 120
>At5g22390.1 68418.m02612 expressed protein
Length = 202
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +2
Query: 77 ERSGKSFLFCLSVRVPWNPIEG 142
+ S KSFL LS PWNP +G
Sbjct: 17 DNSPKSFLDTLSSSSPWNPSKG 38
>At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical to
DNA Helicase [Arabidopsis thaliana] GI:11121449
Length = 1188
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -1
Query: 240 HLHVHPSPEFSRSAESIRTPPQMRCSSRSE 151
H H +P+ S S S+RTPP R +SR E
Sbjct: 229 HYHSTSTPQPSVSNFSLRTPPVDRSASRLE 258
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,706,714
Number of Sequences: 28952
Number of extensions: 342719
Number of successful extensions: 1010
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1010
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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