Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1124
         (762 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote...    28   6.3  
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote...    28   6.3  
Z78420-6|CAB01711.2| 1243|Caenorhabditis elegans Hypothetical pr...    28   8.3  
Z78418-6|CAB01699.2| 1243|Caenorhabditis elegans Hypothetical pr...    28   8.3  

>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
             protein.
          Length = 18519

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +3

Query: 291   TPSKAKYDRETDSEQVP*GKVEKNFEERVQEYVKPFRGKPAKL 419
             T  K K+ +  DS +     VE+  EE+V + +K  RGK  KL
Sbjct: 11655 TSKKDKFGKRQDSREAS-ATVEQQGEEKVTKNLKGSRGKKEKL 11696


>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
             protein.
          Length = 18534

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +3

Query: 291   TPSKAKYDRETDSEQVP*GKVEKNFEERVQEYVKPFRGKPAKL 419
             T  K K+ +  DS +     VE+  EE+V + +K  RGK  KL
Sbjct: 11655 TSKKDKFGKRQDSREAS-ATVEQQGEEKVTKNLKGSRGKKEKL 11696


>Z78420-6|CAB01711.2| 1243|Caenorhabditis elegans Hypothetical
           protein F45H11.4 protein.
          Length = 1243

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 542 TLNVHVPCRRRRTHETNVPSTSERT*TYAR 453
           T +VHVP  R  TH T+V + +E    ++R
Sbjct: 909 TASVHVPVSRGSTHSTDVSTQTEAASKFSR 938


>Z78418-6|CAB01699.2| 1243|Caenorhabditis elegans Hypothetical
           protein F45H11.4 protein.
          Length = 1243

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 542 TLNVHVPCRRRRTHETNVPSTSERT*TYAR 453
           T +VHVP  R  TH T+V + +E    ++R
Sbjct: 909 TASVHVPVSRGSTHSTDVSTQTEAASKFSR 938


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,413,761
Number of Sequences: 27780
Number of extensions: 341830
Number of successful extensions: 966
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 966
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)