Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1124
         (762 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g24740.1 68416.m03106 expressed protein                             29   2.6  
At1g51160.1 68414.m05752 synbindin, putative similar to Swiss-Pr...    29   4.5  
At4g08880.1 68417.m01464 Ulp1 protease family protein contains P...    28   5.9  
At3g25910.1 68416.m03230 expressed protein                             28   7.8  
At1g04300.1 68414.m00421 meprin and TRAF homology domain-contain...    28   7.8  

>At3g24740.1 68416.m03106 expressed protein
          Length = 354

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
 Frame = -1

Query: 270 HSQATHSKERPSRRDPPSLRAWHPL---RENGPV 178
           H++ TH   RPS  DP   RAW  L   RE G +
Sbjct: 184 HARRTHPTTRPSDTDPSRERAWRRLENQREYGDI 217


>At1g51160.1 68414.m05752 synbindin, putative similar to
           Swiss-Prot:Q9ES56 synbindin (TRS23 homolog) [Mus
           musculus]
          Length = 169

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +3

Query: 615 GRPYEFYSFRTRSDRVSFRSTHSDGIIKLITH 710
           G+   F+SFRT + ++SF  T S   I L+TH
Sbjct: 88  GQGCSFHSFRTNTYKLSFMETPSGIKIILVTH 119


>At4g08880.1 68417.m01464 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain; similar to At3g24380, At5g36840,
           At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
           At2g05560, At1g34730, At1g27790, At1g34740, At1g27780,
           At5g36850, At3g42730, At1g52020, At3g24390, At4g05280,
           At1g25886, At4g03300
          Length = 1463

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = -3

Query: 235 SPRPSVATGLAPSTGKRPRSRRTWTGVVATRKRNLPNTTSPVID 104
           S  P  +   AP TGK+P  R +  G   TRK +     S  +D
Sbjct: 376 SREPPTSMDKAPVTGKKPSRRMSTKGSTGTRKSSRLTRVSHDVD 419


>At3g25910.1 68416.m03230 expressed protein
          Length = 372

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -1

Query: 270 HSQATHSKERPSRRDPPSLRAWHPLRENGPVQDEL 166
           H++  H   RPS  DP   R+W  L     + D L
Sbjct: 220 HARLLHPGVRPSEADPERQRSWRRLERQSDLGDLL 254


>At1g04300.1 68414.m00421 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein weak similarity
           to ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471;contains Pfam PF00917: Meprin And
           TRAF-Homology (MATH) domain
          Length = 1052

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
 Frame = -1

Query: 594 RRTGRDALLREKCTSSRDVKRSRTVPTEKNARNERSVNI*THV-----NVRPRENDE 439
           +R  R A  REK +  +  K+ R     K+ R E  V+  TH      N    +NDE
Sbjct: 412 QRAKRGAAEREKKSKKKQAKQKRNKNKGKDKRKEEKVSFATHAKDLEENQNQNQNDE 468


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,556,032
Number of Sequences: 28952
Number of extensions: 320130
Number of successful extensions: 839
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1702303248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)