Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1123
         (677 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Triboliu...    25   0.75 
U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    25   0.75 
U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...    25   0.75 
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    22   4.0  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    22   4.0  

>X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Tribolium
           castaneum mRNAfor alhpa amylase 3'region. ).
          Length = 489

 Score = 24.6 bits (51), Expect = 0.75
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 345 AQKGLGVSRLEPPSVQILVVVANTPARPW 431
           A KG G  ++ PP+  ++V  +N   RPW
Sbjct: 49  APKGFGGVQISPPNENLVVTSSN---RPW 74


>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 24.6 bits (51), Expect = 0.75
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 345 AQKGLGVSRLEPPSVQILVVVANTPARPW 431
           A KG G  ++ PP+  ++V  +N   RPW
Sbjct: 50  APKGFGGVQISPPNENLVVTSSN---RPW 75


>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score = 24.6 bits (51), Expect = 0.75
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 345 AQKGLGVSRLEPPSVQILVVVANTPARPW 431
           A KG G  ++ PP+  ++V  +N   RPW
Sbjct: 50  APKGFGGVQISPPNENLVVTSSN---RPW 75


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +3

Query: 159 GRWPWKSESAKECATTHLPKQPAL 230
           GR  WK    +  AT  L K P+L
Sbjct: 79  GRKAWKHLDFRNSATAELLKNPSL 102



 Score = 21.0 bits (42), Expect = 9.3
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = -1

Query: 413 ICYYHQDLHRRRLQAAHAQTLLRSPSRTSYS 321
           ICYYH  L    +  A  Q    + + T +S
Sbjct: 120 ICYYHFTLELYTVLGAACQVCTPNATNTVWS 150


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +3

Query: 159 GRWPWKSESAKECATTHLPKQPAL 230
           GR  WK    +  AT  L K P+L
Sbjct: 79  GRKAWKHLDFRNSATAELLKNPSL 102



 Score = 21.0 bits (42), Expect = 9.3
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = -1

Query: 413 ICYYHQDLHRRRLQAAHAQTLLRSPSRTSYS 321
           ICYYH  L    +  A  Q    + + T +S
Sbjct: 120 ICYYHFTLELYTVLGAACQVCTPNATNTVWS 150


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,507
Number of Sequences: 336
Number of extensions: 3623
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17697850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)