Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1123
         (677 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces p...    29   0.47 
SPCC16A11.09c |tim23||mitochondrial inner membrane presequence t...    28   1.1  
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb...    28   1.4  
SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit S...    28   1.4  
SPAC328.07c |||heavy metal ion homeostasis protein |Schizosaccha...    25   7.6  
SPAC4D7.08c |ade4|min13, aza1|amidophosphoribosyltransferase |Sc...    25   7.6  

>SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 245

 Score = 29.5 bits (63), Expect = 0.47
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -3

Query: 459 TRNPSPRQSSRASLEYLLLPPRSAPTEAPSGSRPDP 352
           ++NP  R +SR+       PP+SAP++  S    DP
Sbjct: 191 SKNPQNRSNSRSKQRNKNAPPKSAPSKRKSNILDDP 226


>SPCC16A11.09c |tim23||mitochondrial inner membrane presequence
           translocase complex subunit Tim23|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 210

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -3

Query: 465 LFTRNPSPRQSSRASLEYLLLPPRSAPTEAPSGSRPDPSAL 343
           LFTRN     +S+     L +P  +  ++  SGS  DP+ L
Sbjct: 4   LFTRNKEEEPTSKIDSSELQVPTEATASDILSGSEFDPAKL 44


>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 741

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
 Frame = -3

Query: 441 RQSSRASLEYLLLPPRSAPTEAPSGSRP----DPSALSVAHVLLVT 316
           RQSS    +YL   P S  TE   G+ P     P A S+  + ++T
Sbjct: 17  RQSSEGHDDYLNRNPNSEATEGEEGTHPTTGTQPVAFSIGTMFIIT 62


>SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit
           Sfc6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 582

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +2

Query: 317 VTSRTCATESAEGSGREPLGASVGADLGGSSKYSSEALED 436
           + S+     S++G+G EP   +     G + K SS+ LE+
Sbjct: 60  IRSQPLTPSSSKGAGNEPKSQNSSTTRGSAKKQSSKGLEE 99


>SPAC328.07c |||heavy metal ion homeostasis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 277

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -2

Query: 652 TLVFKDEGTIIETVPLPGSGIGTGFPFAQRALFFIIF 542
           T+V  D G+    + + G  +GTGF F   A   I+F
Sbjct: 139 TMVIPDYGS--NEIYIDGMSVGTGFSFVWSACVAILF 173


>SPAC4D7.08c |ade4|min13, aza1|amidophosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 15/47 (31%), Positives = 18/47 (38%)
 Frame = -1

Query: 263 CIGKRFSAIHFQGWLLRQVSRCTLLSGFRLPWPPSCCHERPTPFMVS 123
           C G    A  F    LRQ+     +   R P   SC H    PF V+
Sbjct: 49  CKGSGMVADVFSQHQLRQLVGSMGIGHLRYPTAGSCAHSEAQPFYVN 95


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,887,737
Number of Sequences: 5004
Number of extensions: 59627
Number of successful extensions: 157
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)