Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1123
         (677 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_01_0025 - 441528-444284                                             29   4.5  
05_01_0304 - 2392526-2392828                                           28   6.0  
12_02_1002 + 25176434-25176501,25176613-25176859,25178106-251781...    28   7.9  
06_03_0099 + 16633928-16638213,16638299-16638386,16638823-166389...    28   7.9  
02_05_1073 - 33895608-33895880,33896133-33896180,33896273-338965...    28   7.9  
01_06_0956 - 33343503-33344086,33344225-33344384                       28   7.9  

>09_01_0025 - 441528-444284
          Length = 918

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 10/24 (41%), Positives = 19/24 (79%)
 Frame = -3

Query: 405 LPPRSAPTEAPSGSRPDPSALSVA 334
           +P R +PT+ P+GS P PS+++++
Sbjct: 13  IPLRCSPTQPPAGSDPIPSSMNLS 36


>05_01_0304 - 2392526-2392828
          Length = 100

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -2

Query: 496 SLGSTDSRATTVHAKPFSTSVLQGLAG 416
           S+   + RATTV A+P +T+V  G AG
Sbjct: 33  SVYGANRRATTVKARPATTAVAAGFAG 59


>12_02_1002 +
           25176434-25176501,25176613-25176859,25178106-25178171,
           25178754-25178822,25179007-25179080,25180850-25180991,
           25181546-25181596,25181769-25181774
          Length = 240

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 378 PPSVQILVVVANTPARPW 431
           PPS  +LV+V   P RPW
Sbjct: 174 PPSSALLVIVEEGPTRPW 191


>06_03_0099 +
           16633928-16638213,16638299-16638386,16638823-16638950,
           16640008-16640278
          Length = 1590

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
 Frame = -1

Query: 227 GWLLRQVSRCTLLSGFRL---PWPPSCCHER 144
           G+LLR  +   LLS  RL   P PP CCH R
Sbjct: 63  GYLLRHSAHFLLLSA-RLRPPPPPPRCCHRR 92


>02_05_1073 -
           33895608-33895880,33896133-33896180,33896273-33896509,
           33897233-33897269,33898603-33898913
          Length = 301

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 19/63 (30%), Positives = 30/63 (47%)
 Frame = -2

Query: 640 KDEGTIIETVPLPGSGIGTGFPFAQRALFFIIFKNYKKTRHIDIDLSLSLGSTDSRATTV 461
           K  G ++ +  L  SGI   +P  +  L+F IFKN  K + +D  + +  G+ D      
Sbjct: 165 KLRGVVLHSAIL--SGIRVLYP-VKVTLWFDIFKNIDKIKQVDCPVLVIHGTADDIVDFS 221

Query: 460 HAK 452
           H K
Sbjct: 222 HGK 224


>01_06_0956 - 33343503-33344086,33344225-33344384
          Length = 247

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -3

Query: 450 PSPRQSSRASLEYLLLPPRSAPTEAPSGSRPDPSALSVAH 331
           PSPR   R +   + LPP  AP  +P+   P P+A    H
Sbjct: 135 PSPRHKRRTAPAPMPLPPAQAPVWSPA---PAPAATQRRH 171


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,466,962
Number of Sequences: 37544
Number of extensions: 478052
Number of successful extensions: 1702
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1700
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)