Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1123
         (677 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99281-6|CAB54458.2|  625|Caenorhabditis elegans Hypothetical pr...    29   3.0  
Z99281-5|CAB54457.1|  553|Caenorhabditis elegans Hypothetical pr...    29   3.0  
Z78418-3|CAB01697.1|  932|Caenorhabditis elegans Hypothetical pr...    24   5.8  
Z82277-3|CAB05249.2|  495|Caenorhabditis elegans Hypothetical pr...    27   9.3  

>Z99281-6|CAB54458.2|  625|Caenorhabditis elegans Hypothetical
           protein Y57G11C.9b protein.
          Length = 625

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -3

Query: 456 RNPSPRQSSRASLEYLLLPPRSAPTEAPSGSRPDPSA 346
           R   P++S +  L  + LPP++    +PS + P P A
Sbjct: 278 RETQPKKSVKEELPQIPLPPKTEAAASPSPAPPTPKA 314


>Z99281-5|CAB54457.1|  553|Caenorhabditis elegans Hypothetical
           protein Y57G11C.9a protein.
          Length = 553

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -3

Query: 456 RNPSPRQSSRASLEYLLLPPRSAPTEAPSGSRPDPSA 346
           R   P++S +  L  + LPP++    +PS + P P A
Sbjct: 278 RETQPKKSVKEELPQIPLPPKTEAAASPSPAPPTPKA 314


>Z78418-3|CAB01697.1|  932|Caenorhabditis elegans Hypothetical
           protein F25D7.4 protein.
          Length = 932

 Score = 23.8 bits (49), Expect(2) = 5.8
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 393 SAPTEAPSGSRPDPSALSV 337
           SAP  AP  SR DP+ +++
Sbjct: 428 SAPATAPEASRRDPNDVTI 446



 Score = 22.6 bits (46), Expect(2) = 5.8
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -3

Query: 459 TRNPSPRQSSRASLEYLLLPPRSAPTEAP 373
           TR P P +S+ A       PPR AP +AP
Sbjct: 368 TRAPIPARSAPA-------PPRGAPAKAP 389


>Z82277-3|CAB05249.2|  495|Caenorhabditis elegans Hypothetical
           protein LLC1.3 protein.
          Length = 495

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 586 TGFPFAQRALFFIIFKNYKKTRHIDI 509
           T  PFA+R  F ++ +NY  T+  D+
Sbjct: 7   TQLPFAKRQFFQVLARNYSNTQDADL 32


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,269,858
Number of Sequences: 27780
Number of extensions: 353723
Number of successful extensions: 1059
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1059
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)