Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1123
         (677 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    25   0.50 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.88 
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    24   1.2  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    24   1.2  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   6.2  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   8.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   8.2  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 25.4 bits (53), Expect = 0.50
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +3

Query: 186 AKECATTHLPKQPALKMDGAEAFAYTLPLPARVMLNF 296
           +K+ A     K    K+    + ++ +PLP RV+ NF
Sbjct: 199 SKKLAKAAASKAALAKLRNVHSSSFCIPLPVRVLPNF 235


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.6 bits (51), Expect = 0.88
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +1

Query: 10   NEEAGDLMTEPSGPILVSRTGA 75
            N++  D +T P  P+ +SR G+
Sbjct: 1387 NDDGSDRLTSPPTPLSISRAGS 1408


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
 Frame = -2

Query: 418 GVFATTTKICTD---GGSKRLTPRPFCALRRA 332
           G+ AT T I  D   GGS +LTP P  A  +A
Sbjct: 89  GIPATLTYISLDTNRGGSPKLTPYPNWAQNKA 120


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +2

Query: 197 CNDSPAEATSPENGW 241
           C D P E   PE+GW
Sbjct: 642 CRDIPEEFLRPESGW 656


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 10/32 (31%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +2

Query: 506 IYVDVACF-FIIFKNNEK*RPLSERESGSYSG 598
           + + VA + FI+ KN++  R +SE+    ++G
Sbjct: 94  VQIAVAVYAFIVVKNDDNFRNISEKYQEIFNG 125


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = -3

Query: 648 SFLKTRERLLKRFRCRVPE*E--PDSLSL 568
           S LKT ++L  +  C VPE    P S+SL
Sbjct: 107 SLLKTADQLKIKGLCEVPESRDGPPSVSL 135


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 360 GVSRLEPPSVQILVVVANTPA 422
           GVS++ P S+  LV    +PA
Sbjct: 385 GVSQVSPVSMSALVSAVRSPA 405


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,227
Number of Sequences: 438
Number of extensions: 4324
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)