Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1122
         (683 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7RPB6 Cluster: Putative uncharacterized protein PY0154...    35   2.1  
UniRef50_A2FM15 Cluster: ABC transporter family protein; n=1; Tr...    34   3.7  
UniRef50_Q54D34 Cluster: Putative uncharacterized protein rad17;...    33   4.9  
UniRef50_Q2NFN5 Cluster: Member of asn/thr-rich large protein fa...    33   6.5  
UniRef50_Q9HFR4 Cluster: Autophagy-related protein 2; n=2; Fungi...    33   6.5  
UniRef50_Q54R40 Cluster: Putative uncharacterized protein; n=1; ...    33   8.6  

>UniRef50_Q7RPB6 Cluster: Putative uncharacterized protein PY01543;
           n=7; Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein PY01543 - Plasmodium yoelii yoelii
          Length = 1776

 Score = 34.7 bits (76), Expect = 2.1
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -1

Query: 170 FHKNNSSKCNFLSVIMFSSLVLFNLIKLT*HYYCH 66
           + KNN  KC +L +  FS LV FN++ +    +C+
Sbjct: 816 YFKNNCKKCKYLKISNFSILVFFNMLFIIKRIFCN 850


>UniRef50_A2FM15 Cluster: ABC transporter family protein; n=1;
           Trichomonas vaginalis G3|Rep: ABC transporter family
           protein - Trichomonas vaginalis G3
          Length = 756

 Score = 33.9 bits (74), Expect = 3.7
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
 Frame = +3

Query: 393 LYSTSYIHCPDILTGLPV*YILFHFVFVRFIKNSY--FLVSISIFTTVHIIINFIPYTN 563
           LY  +++ C   +    +  ILF++V+  F  N Y  +L+SI I  T +++I F  + N
Sbjct: 284 LYPAAFVGCFFSIVYSFIPIILFYYVWSWFFWNKYISYLLSIFIHITTYVVIRFFAFKN 342


>UniRef50_Q54D34 Cluster: Putative uncharacterized protein rad17; n=1;
            Dictyostelium discoideum AX4|Rep: Putative
            uncharacterized protein rad17 - Dictyostelium discoideum
            AX4
          Length = 1191

 Score = 33.5 bits (73), Expect = 4.9
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
 Frame = +3

Query: 156  IIFVKPIMKLVK*HNIVATNLKNNLL----ITNSWPNVISSISNLGNVTLNFFFYYQ 314
            +++  P M+L+   NI + N  NN      I NS  ++ISSI    N  LN F Y++
Sbjct: 1031 LLYTLPFMRLINQFNIRSNNRNNNNNNNNNINNSNNDIISSIMKFDNKLLNDFCYFK 1087


>UniRef50_Q2NFN5 Cluster: Member of asn/thr-rich large protein
           family; n=1; Methanosphaera stadtmanae DSM 3091|Rep:
           Member of asn/thr-rich large protein family -
           Methanosphaera stadtmanae (strain DSM 3091)
          Length = 1063

 Score = 33.1 bits (72), Expect = 6.5
 Identities = 18/41 (43%), Positives = 25/41 (60%)
 Frame = +3

Query: 174 IMKLVK*HNIVATNLKNNLLITNSWPNVISSISNLGNVTLN 296
           + K +K  NI  T + NN+ ITN+  N  S I N GN+T+N
Sbjct: 149 LKKFIK-TNINTTLILNNITITNTTDNYGSIIHNSGNLTIN 188


>UniRef50_Q9HFR4 Cluster: Autophagy-related protein 2; n=2;
           Fungi/Metazoa group|Rep: Autophagy-related protein 2 -
           Pichia pastoris (Yeast)
          Length = 1862

 Score = 33.1 bits (72), Expect = 6.5
 Identities = 13/35 (37%), Positives = 26/35 (74%), Gaps = 1/35 (2%)
 Frame = +2

Query: 368 LETYENIIIILDELH-TLSRYPDRVTCIIHTISFR 469
           L+++EN+ II+D++H  +S  P+ +T ++ T+S R
Sbjct: 330 LQSFENVSIIIDQIHVAVSPIPESLTALLETLSKR 364


>UniRef50_Q54R40 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 252

 Score = 32.7 bits (71), Expect = 8.6
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = +3

Query: 213 NLKNNLLITNSWPNVISSISNLGNVTLNFFFYYQ 314
           N+ NN+ I N   N +++I+N  NV  N+ +YY+
Sbjct: 214 NINNNININNDNKNNVNNINNTNNVDGNWVYYYK 247


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 551,948,924
Number of Sequences: 1657284
Number of extensions: 9845618
Number of successful extensions: 21105
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 20203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21095
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53305790091
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)