Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1122
         (683 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|ch...    26   5.8  
SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB...    26   5.8  
SPCC830.04c |mug128||sequence orphan|Schizosaccharomyces pombe|c...    25   7.7  

>SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 474

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 456 LFH-FVFVRFIKNSYFLVSISIFTTVHIIINFIPYTN 563
           LFH F+F  FI+N+    S +  T   +I+  + +++
Sbjct: 354 LFHLFLFAAFIRNNSLYTSFNFITEKPVIVGLLLFSD 390


>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 588

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -1

Query: 227 IIF*ISCDDIMLFN*FHYWFHKNNSSKCNFL 135
           ++F I+   ++ FN  +YW  K+NS K N L
Sbjct: 239 VLFNITMLRLVSFNMDYYWSLKHNSEKLNTL 269


>SPCC830.04c |mug128||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 143

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 5/45 (11%)
 Frame = -1

Query: 392 LLYSH-----KSLIIVQIWRLGLDKFIKNDLLVIKKKIQSHIPQI 273
           L+Y H     + ++ +  W LG ++ I+ +  + K+K  +HIPQ+
Sbjct: 59  LIYKHTCRCFQQVVRIVYWFLG-NQVIRENFSIKKRKPHNHIPQL 102


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,489,121
Number of Sequences: 5004
Number of extensions: 47039
Number of successful extensions: 120
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)