Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1122
         (683 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic acetylch...    23   6.8  
AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic acetylch...    23   6.8  
AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic acetylch...    23   6.8  
AY705394-1|AAU12503.1|  557|Anopheles gambiae nicotinic acetylch...    23   9.0  

>AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 23.4 bits (48), Expect = 6.8
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 186 VK*HNIVATNLKNNLLITNSW 248
           +K   ++  NLKN ++ TN W
Sbjct: 59  LKLSQLIDVNLKNQIMTTNLW 79


>AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 23.4 bits (48), Expect = 6.8
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 186 VK*HNIVATNLKNNLLITNSW 248
           +K   ++  NLKN ++ TN W
Sbjct: 59  LKLSQLIDVNLKNQIMTTNLW 79


>AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 3 protein.
          Length = 710

 Score = 23.4 bits (48), Expect = 6.8
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 186 VK*HNIVATNLKNNLLITNSW 248
           +K   ++  NLKN ++ TN W
Sbjct: 55  LKLSQLIDVNLKNQIMTTNLW 75


>AY705394-1|AAU12503.1|  557|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 1 protein.
          Length = 557

 Score = 23.0 bits (47), Expect = 9.0
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 201 IVATNLKNNLLITNSW 248
           ++  NLKN ++ TN W
Sbjct: 60  LIDVNLKNQIMTTNVW 75


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 602,311
Number of Sequences: 2352
Number of extensions: 11634
Number of successful extensions: 16
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 68995575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)