Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1122
         (683 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF101316-1|AAC69231.1|  684|Caenorhabditis elegans Hypothetical ...    30   1.3  
AL021447-5|CAA16268.4|  312|Caenorhabditis elegans Hypothetical ...    30   1.8  
AF125964-6|AAD14755.2|  589|Caenorhabditis elegans Acid sphingom...    30   1.8  

>AF101316-1|AAC69231.1|  684|Caenorhabditis elegans Hypothetical
           protein F52F10.3 protein.
          Length = 684

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = +3

Query: 396 YSTSYIHCPDILTGLPV*YILFHFVFVRFIKNSYFLVSISIFTTVHIIINFIPYTNY 566
           YS  +I CP  L GL   Y+L  +   R   N  + VSI ++    ++  F  ++ Y
Sbjct: 466 YSKPWIRCPPYLVGLLTGYLLATYGTRRIRLN--WAVSIGVWIVAFVVAGFCIFSTY 520


>AL021447-5|CAA16268.4|  312|Caenorhabditis elegans Hypothetical
           protein F19B2.3 protein.
          Length = 312

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 16/58 (27%), Positives = 33/58 (56%), Gaps = 6/58 (10%)
 Frame = +3

Query: 402 TSYIHCPD-ILTGLPV*YILFHF-----VFVRFIKNSYFLVSISIFTTVHIIINFIPY 557
           ++Y++  D I++ + +   LFHF      ++R +  + FL+ I++   +HII N I +
Sbjct: 31  SAYLYLTDFIISFIGIFPSLFHFWILTRTYMRHLTTNLFLIGITVCGIIHIICNIIEF 88


>AF125964-6|AAD14755.2|  589|Caenorhabditis elegans Acid
           sphingomyelinase protein 3 protein.
          Length = 589

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = -2

Query: 661 KCIKRVALSLCSRFH*QENISLQYFYHDLFEI*FVYGIKLIII 533
           +C+  +A+ +C  FH ++N    +   D F   F+Y IK I++
Sbjct: 42  ECVMEIAVFICETFHIEDNDVCNFIISD-FSDEFMYVIKQILV 83


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,431,228
Number of Sequences: 27780
Number of extensions: 253705
Number of successful extensions: 549
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)