Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1122
         (683 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g29050.1 68414.m03556 expressed protein similar to hypothetic...    28   6.6  
At5g63020.1 68418.m07906 disease resistance protein (CC-NBS-LRR ...    27   8.8  

>At1g29050.1 68414.m03556 expressed protein similar to hypothetical
           protein GB:AAB67625 GI:2342727 from [Arabidopsis
           thaliana]
          Length = 380

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = -1

Query: 203 DIMLFN*FHYWFHKNNSSKCNFL 135
           D+++FN +H+W HK  S   +++
Sbjct: 214 DVLVFNSWHWWTHKGQSQGWDYI 236


>At5g63020.1 68418.m07906 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 888

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 310 TNKSFLINLSNPSLQICTIIRDL 378
           T  +F  NLS  SL+ CT +RDL
Sbjct: 733 TTTTFFPNLSQVSLEFCTRLRDL 755


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,975,229
Number of Sequences: 28952
Number of extensions: 209413
Number of successful extensions: 365
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 365
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)