Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1121
(550 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0098 + 25560158-25560925 32 0.35
06_01_1013 - 7931756-7935109 31 0.46
03_04_0090 + 17228253-17228403,17229062-17229129,17229238-172309... 31 0.61
06_01_0350 + 2534422-2535615 31 0.80
12_02_0407 - 18654134-18654172,18654913-18655803 30 1.4
12_01_0796 + 7292523-7292783,7292963-7293018,7295274-7295331,729... 29 1.8
12_02_0969 - 24936399-24936699,24936779-24936949,24937032-249378... 29 3.2
06_01_0268 + 1989069-1989293,1989938-1990020,1990136-1990357,199... 29 3.2
04_03_0732 + 19095320-19095827,19095848-19096621,19096863-190969... 29 3.2
02_02_0346 - 9214365-9214583,9214830-9214919,9215012-9215177,921... 29 3.2
12_02_0854 + 23697826-23698033,23699111-23699276,23699430-236994... 28 5.6
12_02_0096 - 13573612-13573632,13573846-13573884,13574160-135744... 28 5.6
05_04_0162 + 18645459-18645827,18645934-18646149,18646224-186462... 28 5.6
01_05_0408 + 21888898-21890181,21891289-21891984,21892167-21893705 28 5.6
11_08_0081 - 28216179-28216381,28216590-28216657,28217131-282172... 27 7.5
04_04_0759 - 27832340-27832480,27832568-27832593,27832759-27834154 27 7.5
04_03_0211 - 12694217-12694318,12695119-12695256,12695470-12695628 27 7.5
12_01_0801 + 7351171-7351198,7351383-7352020,7352098-7352559,735... 27 9.9
06_03_0262 + 18905352-18905481,18905570-18906003,18906082-189063... 27 9.9
06_02_0270 - 13613853-13614153,13614233-13614403,13614486-136153... 27 9.9
05_03_0466 - 14362190-14362312,14362411-14362658,14363289-14363664 27 9.9
03_05_0088 + 20664580-20664696,20664796-20665218,20665297-206655... 27 9.9
02_04_0628 + 24589313-24589472,24589604-24589765,24589850-245899... 27 9.9
02_03_0337 + 17898732-17899370,17899516-17899977,17900058-179006... 27 9.9
>05_06_0098 + 25560158-25560925
Length = 255
Score = 31.9 bits (69), Expect = 0.35
Identities = 16/60 (26%), Positives = 26/60 (43%)
Frame = -2
Query: 453 HRPHPLPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEALHLGDLLRIWVRTGATSP 274
HRP P P + P L +P + V I P PT F + + ++++ + T P
Sbjct: 31 HRPPPPPPSSSSQPALPPSPRTVVPRTIDTTPFPTTFVQADTASFKQVVQMLTGSDTTPP 90
>06_01_1013 - 7931756-7935109
Length = 1117
Score = 31.5 bits (68), Expect = 0.46
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = -3
Query: 299 GYEPARHLHVHPSPEFQGPQRVSGHR 222
G+EP R + +HP+P+ + P R+ G +
Sbjct: 879 GWEPKRFITIHPTPKSKAPARILGSK 904
>03_04_0090 +
17228253-17228403,17229062-17229129,17229238-17230902,
17231002-17231143,17231648-17232399
Length = 925
Score = 31.1 bits (67), Expect = 0.61
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 6/33 (18%)
Frame = -2
Query: 474 TNIDQTRH------RPHPLPVQTRHAPVLRANP 394
T IDQ H + H +PVQ H+PVL+ NP
Sbjct: 324 TQIDQPSHCQRIKNQDHSVPVQKNHSPVLKTNP 356
>06_01_0350 + 2534422-2535615
Length = 397
Score = 30.7 bits (66), Expect = 0.80
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -1
Query: 169 PWNSNAQAEKKTLPGPLGGVFRP 101
PW S+A+ E+K LP PL +F P
Sbjct: 42 PWRSSARLERKLLPPPLPWLFLP 64
>12_02_0407 - 18654134-18654172,18654913-18655803
Length = 309
Score = 29.9 bits (64), Expect = 1.4
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +2
Query: 26 EPGSGTVSIIVPSSLKTSVRRGNPKWPEDAAERSGKSFLFCLSVRVPWNPIEGRY 190
E G+G ++++ PS+ +T P+ P R + CLS ++PI GRY
Sbjct: 115 EEGTGRLTLVNPSTGETLAVPPPPRLPPKRRHRRAPLVVSCLS--FGYHPITGRY 167
>12_01_0796 +
7292523-7292783,7292963-7293018,7295274-7295331,
7295777-7295843,7296461-7296516,7296638-7296691,
7296836-7296961
Length = 225
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -2
Query: 444 HPLPVQTRHAPVLRANPYSEVTDPICRLPL 355
H L + RH P L+A P S + C+LPL
Sbjct: 107 HSLIIPKRHFPSLQATPPSVIAAICCKLPL 136
>12_02_0969 -
24936399-24936699,24936779-24936949,24937032-24937852,
24937946-24938407,24938486-24938890
Length = 719
Score = 28.7 bits (61), Expect = 3.2
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -3
Query: 272 VHPSPEFQGPQRVSGHRRKCGALRVP 195
VHP+P Q S HR C ++ VP
Sbjct: 248 VHPTPRAQHDTNPSHHRSSCASIEVP 273
>06_01_0268 +
1989069-1989293,1989938-1990020,1990136-1990357,
1990434-1990621,1990711-1990835,1990988-1991039,
1991585-1991874,1992229-1992307,1992527-1992657
Length = 464
Score = 28.7 bits (61), Expect = 3.2
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -2
Query: 438 LPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEAL 325
+P Q + A + A+P + V C LP P+LF L L
Sbjct: 292 IPYQFQEATSILASPLAHVPASSCPLPAPSLFSSLPLL 329
>04_03_0732 +
19095320-19095827,19095848-19096621,19096863-19096906,
19097191-19097250
Length = 461
Score = 28.7 bits (61), Expect = 3.2
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -2
Query: 450 RPHPLPVQTRHAPVLRANPYSEVTDP 373
RP+PL V +RHA VL + V DP
Sbjct: 133 RPNPLDVVSRHAGVLSRGDHCLVVDP 158
>02_02_0346 -
9214365-9214583,9214830-9214919,9215012-9215177,
9215601-9215911,9215944-9216566,9216779-9216968,
9217096-9217197,9217285-9217425,9217815-9218411,
9219126-9219286,9220709-9220824,9221538-9221654,
9221746-9221808,9221879-9221949
Length = 988
Score = 28.7 bits (61), Expect = 3.2
Identities = 21/61 (34%), Positives = 26/61 (42%)
Frame = -2
Query: 234 IRTPPQMRCSSRSEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHFGLPRRTLVFKDEGT 55
I+ P M S + + GFHG L+ KL PDL + HF LVF G
Sbjct: 188 IKLYPHM--SGEQKRLIEGAGFHGLVDLKCS-KLRPDLCSWLMEHFNPATNQLVFPGRGA 244
Query: 54 I 52
I
Sbjct: 245 I 245
>12_02_0854 +
23697826-23698033,23699111-23699276,23699430-23699466,
23699531-23700145
Length = 341
Score = 27.9 bits (59), Expect = 5.6
Identities = 15/25 (60%), Positives = 16/25 (64%)
Frame = -3
Query: 476 ARTSTRPGTGRIRFPSKPDTPRSSE 402
A TST PG GR R PS P TP S+
Sbjct: 16 AATSTDPGRGRKRPPS-PSTPTPSD 39
>12_02_0096 -
13573612-13573632,13573846-13573884,13574160-13574493,
13574660-13574830,13574913-13575730,13575812-13576114,
13576352-13577085,13577174-13577303
Length = 849
Score = 27.9 bits (59), Expect = 5.6
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -3
Query: 272 VHPSPEFQGPQRVSGHRRKCGALRVP 195
VHP+P Q S HR C + +VP
Sbjct: 348 VHPTPRAQHDASPSQHRSSCASTKVP 373
>05_04_0162 +
18645459-18645827,18645934-18646149,18646224-18646278,
18646545-18646672,18647134-18647217,18648742-18648867,
18648949-18649086
Length = 371
Score = 27.9 bits (59), Expect = 5.6
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -3
Query: 464 TRPGTGRIRFPSKPDTPRSSEPILIPKLR 378
TRP TG+ P K D RS + I KLR
Sbjct: 108 TRPRTGKAALPLKRDRTRSKRFLEIQKLR 136
>01_05_0408 + 21888898-21890181,21891289-21891984,21892167-21893705
Length = 1172
Score = 27.9 bits (59), Expect = 5.6
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = -3
Query: 290 PARHLHVHPSPEFQGPQRVSGHRRKCGALRVPNHISLL*DSMELER 153
P+ H +H S P+R RR+CGAL + + D + + R
Sbjct: 18 PSHHRLLHRSSLLPFPRRHHHRRRRCGALSIARASASAKDGVTVRR 63
>11_08_0081 -
28216179-28216381,28216590-28216657,28217131-28217298,
28217370-28217436,28217509-28217576,28218256-28218420,
28218490-28218556,28218629-28218696,28219855-28219992,
28220189-28220353,28221227-28221304,28221380-28221532,
28222753-28222823,28223077-28223203,28223306-28223565,
28223679-28223842,28224287-28224450,28225873-28226159
Length = 826
Score = 27.5 bits (58), Expect = 7.5
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Frame = -2
Query: 471 NIDQTRHRPHPLPVQTRHAPVLRANPYSEVTDP--ICRLPLPTLFYRLEALHLGDLLR 304
N+D RP P PV LRA PY P + + L + L ++++ D R
Sbjct: 8 NLDVRVERPRPPPVHPHRPGSLRARPYYRRWTPWIVAAIALSCVVVFLVSMYVNDCPR 65
>04_04_0759 - 27832340-27832480,27832568-27832593,27832759-27834154
Length = 520
Score = 27.5 bits (58), Expect = 7.5
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -3
Query: 305 GYGYEPARHLHVHPSPEFQGPQRVSGHRRKCGALRVP 195
G+ +EP L HPSP+ GPQ ++ G P
Sbjct: 23 GFRFEPKEELVEHPSPQ-PGPQAIASIASSDGEFSSP 58
>04_03_0211 - 12694217-12694318,12695119-12695256,12695470-12695628
Length = 132
Score = 27.5 bits (58), Expect = 7.5
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = -2
Query: 330 ALHLGDLLRIWVRTGATSPRTSLT*ISRSAESIRTPPQMRCSSRSEP 190
A H G I VRT + TS + A SI TP + CS+ + P
Sbjct: 38 ARHTGPRSHIAVRTCHVNDETSRSTCRNGATSIATPSVVACSALALP 84
>12_01_0801 +
7351171-7351198,7351383-7352020,7352098-7352559,
7352641-7353105
Length = 530
Score = 27.1 bits (57), Expect = 9.9
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -3
Query: 272 VHPSPEFQGPQRVSGHRRKCGALRVP 195
VHP+P Q S HR C + VP
Sbjct: 335 VHPTPRAQHDASPSQHRSSCASTEVP 360
>06_03_0262 +
18905352-18905481,18905570-18906003,18906082-18906303,
18906381-18906842,18906935-18907755,18907838-18908008,
18908088-18908347,18908453-18908508,18908786-18908824,
18909711-18909764
Length = 882
Score = 27.1 bits (57), Expect = 9.9
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -3
Query: 272 VHPSPEFQGPQRVSGHRRKCGALRVP 195
VHP+P Q S HR C + VP
Sbjct: 375 VHPTPRAQHDASPSQHRSSCSSTEVP 400
>06_02_0270 -
13613853-13614153,13614233-13614403,13614486-13615318,
13615401-13615746,13615940-13616127,13616238-13616408
Length = 669
Score = 27.1 bits (57), Expect = 9.9
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -3
Query: 272 VHPSPEFQGPQRVSGHRRKCGALRVP 195
VHP+P Q S HR C + VP
Sbjct: 194 VHPTPRAQHDTSPSQHRSSCASTEVP 219
>05_03_0466 - 14362190-14362312,14362411-14362658,14363289-14363664
Length = 248
Score = 27.1 bits (57), Expect = 9.9
Identities = 23/70 (32%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Frame = +2
Query: 5 GNPVPIPEPGSGTVSIIVPSSLKTSVRRGNPKWPEDAAERSGKSFLFCLSVRVPWNPIEG 184
G V + PGSG V +IVP V G W R + F F + +E
Sbjct: 13 GCGVRVIVPGSGGVQVIVPGG--GGVHPGG-DWRRTTKSRRNR-FRFSARPEIKVAALEE 68
Query: 185 RYGS-EREEH 211
+GS E EEH
Sbjct: 69 EHGSGEEEEH 78
>03_05_0088 +
20664580-20664696,20664796-20665218,20665297-20665518,
20665597-20666058,20666140-20666300,20666422-20666973,
20667056-20667125,20667141-20667226,20667306-20667673,
20668002-20668018
Length = 825
Score = 27.1 bits (57), Expect = 9.9
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -3
Query: 272 VHPSPEFQGPQRVSGHRRKCGALRVP 195
VHP+P Q S HR C + VP
Sbjct: 367 VHPTPRAQHDASPSQHRSSCASTEVP 392
>02_04_0628 +
24589313-24589472,24589604-24589765,24589850-24589983,
24590108-24590275,24590481-24590562,24590734-24591512
Length = 494
Score = 27.1 bits (57), Expect = 9.9
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = -2
Query: 429 QTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEALHLGDLLRIW 298
+ RH P++ + EV+ + L L Y ++ L + +LL +W
Sbjct: 100 ELRHIPIIMMSNRDEVSVVVKCLRLGAAEYLVKPLRMNELLNLW 143
>02_03_0337 +
17898732-17899370,17899516-17899977,17900058-17900688,
17900819-17900888,17900971-17901141,17901221-17901479,
17901918-17901956,17902900-17902914
Length = 761
Score = 27.1 bits (57), Expect = 9.9
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -3
Query: 272 VHPSPEFQGPQRVSGHRRKCGALRVP 195
VHP+P Q S HR C + VP
Sbjct: 326 VHPTPRAQHDASPSQHRSSCASTEVP 351
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,660,343
Number of Sequences: 37544
Number of extensions: 392594
Number of successful extensions: 1421
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1420
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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