Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1121
         (550 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g76965.1 68414.m08961 glycine-rich protein                          29   1.5  
At4g35730.1 68417.m05071 expressed protein  contains Pfam profil...    29   2.0  
At3g56510.1 68416.m06284 TBP-binding protein, putative similar t...    29   2.0  
At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to ...    29   2.7  
At3g13320.1 68416.m01677 calcium exchanger (CAX2) almost identic...    29   2.7  
At1g72520.1 68414.m08386 lipoxygenase, putative similar to lipox...    28   3.6  
At2g02800.2 68415.m00225 protein kinase (APK2b) identical to pro...    28   4.7  
At2g02800.1 68415.m00224 protein kinase (APK2b) identical to pro...    28   4.7  
At5g60000.1 68418.m07524 hypothetical protein                          27   6.2  
At5g22390.1 68418.m02612 expressed protein                             27   6.2  
At5g42370.1 68418.m05159 expressed protein                             27   8.3  
At2g05210.1 68415.m00549 expressed protein                             27   8.3  

>At1g76965.1 68414.m08961 glycine-rich protein 
          Length = 158

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -3

Query: 458 PGTGRIRFPSKPDTPRSSEPILIPKLRIQFAD 363
           PG   + FP KP+ P    P  +P+L + F D
Sbjct: 93  PGAAIVVFPKKPEEPVKVVPTPMPQLNLFFGD 124


>At4g35730.1 68417.m05071 expressed protein  contains Pfam profile:
           PF03398 eukaryotic protein of unknown function, DUF292
          Length = 430

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = -3

Query: 533 YTVFEAELFKILTR*NEYNARTSTRPGTGRIRFPSKPDTPRSSEP 399
           YT  EAE  + + R + YN R+   P T  I+F         +EP
Sbjct: 326 YTNTEAEAKETMRRRHSYNPRSVPPPATSEIKFDESDYYEEETEP 370


>At3g56510.1 68416.m06284 TBP-binding protein, putative similar to
           TBP-binding protein ABT1 GI:6518527 from [Mus musculus]
          Length = 257

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 18/68 (26%), Positives = 29/68 (42%)
 Frame = -1

Query: 211 VLFAFRTISPFYRIPWNSNAQAEKKTLPGPLGGVFRPLWVTPSNTSF*RRGNDY*NGSAA 32
           +L  +  +   Y  P +S AQ  +K   G  G  F   WV  +  S  +R  D  NG   
Sbjct: 69  ILAQYGELGRIYLAPEDSEAQVHRKRAGGFRGQRFSEGWVEFAKKSVAKRVADMLNGEQI 128

Query: 31  GFRNRNRI 8
           G + ++ +
Sbjct: 129 GGKKKSSV 136


>At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to
           autophagy 7 [Arabidopsis thaliana] GI:19912147; contains
           Pfam profile PF00899: ThiF family
          Length = 697

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = -3

Query: 245 PQRVSGHRRKCGALRVPNHISLL*DSMELERSGRKENSSRTSRRR 111
           P  ++G    CG  +V NH++LL +S+ L+      ++S  +R +
Sbjct: 42  PISITGFYGPCGHPQVSNHLTLLSESLPLDEQSLIASTSHGNRNK 86


>At3g13320.1 68416.m01677 calcium exchanger (CAX2) almost identical
           to low affinity calcium antiporter CAX2 (GI:1488267)
           [Arabidopsis thaliana]; Ca2+:Cation Antiporter (CaCA)
           Family member PMID:11500563
          Length = 441

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = +2

Query: 47  SIIVPSSLKTSVRRGNPKWPEDAAERSGKSFLFC--LSVRVPWNPI 178
           S++   SL TS  +  PK P+++   S K  +FC  L++ +P+ P+
Sbjct: 41  SLMEQGSLSTSFPQHTPKAPKNSVLNSIKIVIFCNKLNLLLPFGPL 86


>At1g72520.1 68414.m08386 lipoxygenase, putative similar to
           lipoxygenase gi:1495804 [Solanum tuberosum], gi:1654140
           [Lycopersicon esculentum], GB:CAB56692 [Arabidopsis
           thaliana]
          Length = 926

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -2

Query: 240 ESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQK 142
           +S +  P  R    ++PYLPS    G RTLR+K
Sbjct: 215 QSQKDHPSKRILFTNQPYLPSETPSGLRTLREK 247


>At2g02800.2 68415.m00225 protein kinase (APK2b) identical to
           protein kinase APK2b [Arabidopsis thaliana]
           gi|2852449|dbj|BAA24695
          Length = 426

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -3

Query: 467 STRPGTGRIRFPSKPDTPRSSEPILIPKLRIQFA-DFPYLH 348
           ST+PGTG     ++ D+PR S   ++ K   +++ D P LH
Sbjct: 368 STKPGTGVGNRQAQIDSPRGSNGSIVQKSPRRYSYDRPLLH 408


>At2g02800.1 68415.m00224 protein kinase (APK2b) identical to
           protein kinase APK2b [Arabidopsis thaliana]
           gi|2852449|dbj|BAA24695
          Length = 426

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -3

Query: 467 STRPGTGRIRFPSKPDTPRSSEPILIPKLRIQFA-DFPYLH 348
           ST+PGTG     ++ D+PR S   ++ K   +++ D P LH
Sbjct: 368 STKPGTGVGNRQAQIDSPRGSNGSIVQKSPRRYSYDRPLLH 408


>At5g60000.1 68418.m07524 hypothetical protein 
          Length = 149

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
 Frame = -1

Query: 334 RGSSPWRPAADMGTNRRDISTYIPHLNFKVRREYPD-TAANAVLFAFRTISPFYRIPWNS 158
           +GS PW+P   +GT  R+    +    + +     D T +    F       FYR  WN+
Sbjct: 78  QGSRPWQPRTCIGTFYREAHFGMHETPYVLYNSDKDATESKNSCFVVVKDDGFYR--WNN 135

Query: 157 NAQAEKKTLP 128
           N +   K  P
Sbjct: 136 NKRIWDKVFP 145


>At5g22390.1 68418.m02612 expressed protein
          Length = 202

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +2

Query: 119 ERSGKSFLFCLSVRVPWNPIEG 184
           + S KSFL  LS   PWNP +G
Sbjct: 17  DNSPKSFLDTLSSSSPWNPSKG 38


>At5g42370.1 68418.m05159 expressed protein
          Length = 447

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -1

Query: 184 PFYRIPWNSNAQAEKKTLPGPLGGVFRPL-WVTPS 83
           P Y +  +   Q+ +K +P PL  + R L W TPS
Sbjct: 285 PLYDVTSSGLVQSVEKVVPRPLRSIVRLLFWYTPS 319


>At2g05210.1 68415.m00549 expressed protein
          Length = 364

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 18/52 (34%), Positives = 24/52 (46%)
 Frame = -2

Query: 240 ESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHFGLPR 85
           +S  T     C+  +E Y   +GF  T TLR+KR     L    S +F  PR
Sbjct: 282 DSTATLEAFLCNKDAE-YFWGLGFQDTETLRKKRNWL--LGIRESSNFVAPR 330


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,865,284
Number of Sequences: 28952
Number of extensions: 287526
Number of successful extensions: 849
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)