Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1120
         (666 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|...    26   4.2  
SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase |Schizosaccharo...    26   5.6  
SPAC9E9.06c |||threonine synthase |Schizosaccharomyces pombe|chr...    25   7.4  
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    25   9.8  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    25   9.8  

>SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 90  YEMFPPHLLQSEQTAVAFREIFNNLHSV 7
           YE+ P  +L + +T +AFRE  N L  +
Sbjct: 252 YELEPKDILPNFETVIAFRENENGLSKI 279


>SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 571

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 583 NNITFCWFFCKMSNFV 630
           N IT CWF+ K S F+
Sbjct: 368 NEITHCWFWPKFSEFL 383


>SPAC9E9.06c |||threonine synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 514

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -3

Query: 193 DHFLIIFPHSILST-TSLRCV*RTTDQ 116
           DH+ II PH+ +   T LRC+ +T DQ
Sbjct: 415 DHY-IIDPHTAVGVETGLRCLEKTKDQ 440


>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 9/24 (37%), Positives = 18/24 (75%)
 Frame = +1

Query: 319 NYFLSKLQLYEIKLFI*NSIWYWY 390
           N+ +S+L+ + I +F+ + IWYW+
Sbjct: 265 NWTISRLRYFFI-VFVASFIWYWF 287


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -2

Query: 452 QSFLLLLNSHHCIGSLFHLISYQYQILFQINNFISYSCNLLK 327
           QSF  L+NS+  I +L+H +   +  +   NN +  S + LK
Sbjct: 780 QSFTSLVNSYQSISNLYHELRDDHVNMQSQNNTLLESESKLK 821


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,025,023
Number of Sequences: 5004
Number of extensions: 68890
Number of successful extensions: 160
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)