Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1120
         (666 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0572 - 19604643-19604745,19604947-19605629,19605786-196062...    41   8e-04
06_03_0995 + 26704029-26704107,26704543-26704595,26704907-267051...    29   4.4  
12_01_0673 - 5745956-5750346,5750788-5750872,5751018-5751082,575...    28   5.8  

>07_03_0572 - 19604643-19604745,19604947-19605629,19605786-19606284,
            19606370-19606878,19607110-19607148,19607347-19607411,
            19609081-19609201,19610229-19610315,19611096-19611179,
            19611925-19612175,19612869-19612962,19613043-19613284,
            19614187-19614505
          Length = 1031

 Score = 41.1 bits (92), Expect = 8e-04
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +1

Query: 7    HGMKVVEYFSKRDG--GLLALEQMWREHFINVMKPNYLPDLWSVKHNEER 150
            HG +VVE      G   +    Q WR+ F+  + P YLP  W++KH+  R
Sbjct: 952  HGKQVVELLLSNGGEEAINQFSQRWRQVFVASLHPRYLPSGWNIKHSGRR 1001


>06_03_0995 +
           26704029-26704107,26704543-26704595,26704907-26705122,
           26705328-26705411,26705498-26705572,26705711-26705794,
           26706179-26706268,26707463-26707558,26707655-26707726,
           26708500-26708604,26708804-26708845
          Length = 331

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -2

Query: 227 YIQDHLAPITLRSFSDNLPSLHFIHNLSSL 138
           +I  HL P+TLR    NL   H IH   S+
Sbjct: 91  HIDQHLVPLTLRDNLYNLQLKHMIHQALSI 120


>12_01_0673 - 5745956-5750346,5750788-5750872,5751018-5751082,
            5751816-5751993
          Length = 1572

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -2

Query: 227  YIQDHLAPITLRSFSDNLPSLHFIHNLSSLCLTDH 123
            ++ D  + + + S + +LPSL  +  L SLC T+H
Sbjct: 1385 HLVDSRSSLRISSLTIDLPSLLLVEPLKSLCHTEH 1419


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,863,785
Number of Sequences: 37544
Number of extensions: 371829
Number of successful extensions: 706
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)