Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1120
         (666 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5852| Best HMM Match : 3_5_exonuc (HMM E-Value=3.4e-07)             52   3e-07
SB_40146| Best HMM Match : 7tm_1 (HMM E-Value=4.7e-08)                 31   1.1  
SB_38653| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_59669| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_31305| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_31699| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_5852| Best HMM Match : 3_5_exonuc (HMM E-Value=3.4e-07)
          Length = 653

 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 22/51 (43%), Positives = 34/51 (66%)
 Frame = +1

Query: 1   ESHGMKVVEYFSKRDGGLLALEQMWREHFINVMKPNYLPDLWSVKHNEERL 153
           +SHG +VV+   +  G LL  E++WR +F++ M P YLP+ WSV H  E++
Sbjct: 567 KSHGEEVVKRVREL-GKLLDFEKLWRRNFVDSMNPQYLPEFWSVNHRYEKM 616


>SB_40146| Best HMM Match : 7tm_1 (HMM E-Value=4.7e-08)
          Length = 306

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = -1

Query: 489 RGRDFSGSLKIPTVVFIIT*FP-SLYWVIISFNFI 388
           R +  + +L I T+  ++T  P S YWVI+SF+F+
Sbjct: 194 RNKQLAVTLLIVTLASLVTWMPNSCYWVILSFDFL 228


>SB_38653| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 133

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/53 (33%), Positives = 29/53 (54%)
 Frame = +2

Query: 479 SRPRRLCFIFYNCVISKILNGQ*AIITYNFVPRI*IILHFVGFFVKCQTLCHL 637
           S  R +CF+  N  +S++  G   +I +NF+P   I+L  +GF    +TL  L
Sbjct: 10  SARRGICFLDVNHSLSRVAIGCFELIVFNFLP---IVLIALGFTRSLRTLLRL 59


>SB_59669| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3511

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = +1

Query: 13  MKVVEYFSKRDGGLLALEQMWREHFINVMKP-NYLPDLWSVKHNEERLWIKWSEGRLSE 186
           +K  E   +R   +  +EQ   +   N+ K   +L  +W+V    E LW  W  G+  E
Sbjct: 542 LKSQETSLRRGLNIFKIEQALSKDLQNLEKDLEHLEQVWTVTKEWEELWDTWKVGKFVE 600


>SB_31305| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 313

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -2

Query: 434 LNSHHCIGSLFHLISYQYQILFQINNFISYSCN 336
           L+   C  S F LI Y Y +  QI+ F+S + N
Sbjct: 278 LDHSSCDHSSFTLIGYYYSVSLQIDRFVSSNVN 310


>SB_31699| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6119

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -2

Query: 257  EKVYLESLPIYIQDHLAPITLRSFSDNLPSLH--FIHNLSSLC 135
            E+ Y+E L   +Q+HLA +      D+L +    F  N+  +C
Sbjct: 5408 ERQYVEDLKYVVQNHLAEVDADDIPDSLANQRKTFFANIRDIC 5450


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,216,068
Number of Sequences: 59808
Number of extensions: 458890
Number of successful extensions: 920
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 917
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)