Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1120
         (666 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L07143-1|AAB37089.2|  532|Caenorhabditis elegans P granule abnor...    30   1.7  
AB120730-1|BAC87887.1|  532|Caenorhabditis elegans PGL-2 protein.      30   1.7  
AF099917-5|AAC68783.2|  219|Caenorhabditis elegans F-box a prote...    28   5.2  
AF022978-9|AAG24185.1|  353|Caenorhabditis elegans Seven tm rece...    28   6.8  

>L07143-1|AAB37089.2|  532|Caenorhabditis elegans P granule
           abnormality protein 2 protein.
          Length = 532

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
 Frame = -2

Query: 245 LESLPIYIQDHLAP-ITLRSFSDNLPSLHFIHNLSSLCLTDHRSGK*LGFMTFMKCSRHI 69
           LE +P+ I++ + P I +R   D   +LHF+H L  + L + +    L   +F K  +++
Sbjct: 283 LEQIPVEIKNRMFPGIRIRVLQD---TLHFLHQLFKVFLNESQKFDNLAPQSFAKAIKNV 339

Query: 68  CSR 60
             R
Sbjct: 340 WVR 342


>AB120730-1|BAC87887.1|  532|Caenorhabditis elegans PGL-2 protein.
          Length = 532

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
 Frame = -2

Query: 245 LESLPIYIQDHLAP-ITLRSFSDNLPSLHFIHNLSSLCLTDHRSGK*LGFMTFMKCSRHI 69
           LE +P+ I++ + P I +R   D   +LHF+H L  + L + +    L   +F K  +++
Sbjct: 283 LEQIPVEIKNRMFPGIRIRVLQD---TLHFLHQLFKVFLNESQKFDNLAPQSFAKAIKNV 339

Query: 68  CSR 60
             R
Sbjct: 340 WVR 342


>AF099917-5|AAC68783.2|  219|Caenorhabditis elegans F-box a protein
           protein 24 protein.
          Length = 219

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 16/47 (34%), Positives = 19/47 (40%)
 Frame = -3

Query: 325 NNLF*KIRHWQQWHLKKPITILEKKCT*NLFPFIFKTTWRQ*L*DHF 185
           NN F  I H  QW   K  ++L  K    L   +F   W Q   D F
Sbjct: 94  NNQFENIAHLDQWKCAKKCSLLGDKLESRLIDHLFHFQWFQIQLDDF 140


>AF022978-9|AAG24185.1|  353|Caenorhabditis elegans Seven tm
           receptor protein 256 protein.
          Length = 353

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +2

Query: 185 KMISKLLAPGGLEYKWEEILSTLFL 259
           +M+SKL+A  G+ YK++ I   LF+
Sbjct: 229 RMMSKLIATAGVSYKFKTIQKQLFI 253


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,463,663
Number of Sequences: 27780
Number of extensions: 372556
Number of successful extensions: 858
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 856
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)