Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1119
         (560 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12B10.16c |mug157||conserved protein |Schizosaccharomyces po...    30   0.27 
SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   1.4  
SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomy...    26   3.3  
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce...    26   4.4  
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    26   4.4  
SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr 2|...    26   4.4  
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    26   4.4  
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac...    26   4.4  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    26   4.4  
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|...    25   7.6  
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe...    25   7.6  
SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces pomb...    25   7.6  

>SPAC12B10.16c |mug157||conserved protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 509

 Score = 29.9 bits (64), Expect = 0.27
 Identities = 18/38 (47%), Positives = 22/38 (57%)
 Frame = +2

Query: 335 SCPFMRSQLVGQLIEDLFERLHERGDEDLARLCRDLAP 448
           SC    S+ V Q IED+ E+L    DEDLARL  +  P
Sbjct: 55  SCRTFHSKSVEQTIEDVKEQLE---DEDLARLFENCMP 89


>SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 419

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +1

Query: 1   ACKNNQELEVTNSELKEEVESLERQLALTQKALTQCKRKCDERI 132
           ACK+ +E+  +  E +EE+E+L         +    KR  +E+I
Sbjct: 354 ACKDLEEVSKSYEESREEIEALHETFTEEVTSFQSTKRLKEEKI 397



 Score = 26.6 bits (56), Expect = 2.5
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = +1

Query: 7   KNNQELEVTNSELKEEVESLERQLALTQKALTQCKRKCDERIKRMSHELS 156
           ++ +E+E  +    EEV S +    L ++ + Q K + D+ I     +LS
Sbjct: 367 ESREEIEALHETFTEEVTSFQSTKRLKEEKIIQEKSRVDKMIDEYRQKLS 416


>SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 1   ACKNNQELEVTNSELKEEVESLERQLALTQ 90
           AC+ ++ L +  S+L+EEV  L+ QL   Q
Sbjct: 302 ACEQSKALRILVSQLREEVICLKNQLLAHQ 331


>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 960

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 40  ELKEEVESLERQLALTQKALTQCKRKCDERIKRM 141
           ++K E E L +Q    +  LTQ  +K  E+ K+M
Sbjct: 94  KMKREKEILRQQRQKRKSELTQLSQKVKEKFKKM 127


>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
            protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
 Frame = +1

Query: 10   NNQELEVTNSELKEEVESLERQLALTQKALTQCKRKCDERIK--RMSHELSIKXXXXXXX 183
            NN E    NS+++ E ++  R+  L+    T+ KRK   + +   ++ E++I        
Sbjct: 1211 NNDECSKENSQIEPEGQTASREGVLSTPRSTRKKRKLGRKSQSSNVNKEVAISEVSATLE 1270

Query: 184  XXXP*GSH-IARRGQSYGQSA 243
                   H I+ +GQ+  +SA
Sbjct: 1271 NVEVIERHGISEQGQNLDESA 1291


>SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 781

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +2

Query: 299 HSMSYITSDSRCSCPFMRSQLVGQLIEDLFERL 397
           H  +Y T   RC  P++   L   L+  + ERL
Sbjct: 295 HHPAYRTIKDRCGTPYLAKTLSNLLVSHIRERL 327


>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = +1

Query: 7   KNNQELEVTNSELKEEVESLERQLALTQKALTQCKRKCDERIKRMSHELS 156
           K N+ ++  N  LKE + +       T   LTQCK+    RI     E S
Sbjct: 410 KLNKIIKDENENLKEYIRNNSLSFQATAGELTQCKQLPQPRITGNDQENS 459


>SPCC736.14 |dis1||microtubule-associated protein Dis1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 882

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 11/45 (24%), Positives = 24/45 (53%)
 Frame = +1

Query: 19  ELEVTNSELKEEVESLERQLALTQKALTQCKRKCDERIKRMSHEL 153
           +L++ N+E+KE+V   E  ++  +  +T  + + D    R+   L
Sbjct: 724 DLQIQNAEMKEQVYEKESTISQKEVEITSLRNEKDRLSTRLQQVL 768


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1562

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 183 ADETLRQSYRAARPELRPERTEYVTRVT 266
           +  T R S  A+RP L   R +Y+  VT
Sbjct: 909 SQSTSRPSLTASRPSLSRRRNDYINNVT 936


>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 612

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 14/43 (32%), Positives = 26/43 (60%)
 Frame = +1

Query: 25  EVTNSELKEEVESLERQLALTQKALTQCKRKCDERIKRMSHEL 153
           E+  +ELK  V  LER+ A  +++L+  +R+  E +++   EL
Sbjct: 46  EIERAELKIRVAQLERERAKLEQSLSFQQRRA-EMLEKSLREL 87


>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 871

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -2

Query: 91  SASKLTVSPEIRPPPSARCW*PPT 20
           S+S +T SPE  P PSA+   P T
Sbjct: 566 SSSSVTKSPESMPDPSAKASSPVT 589


>SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 476

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = +3

Query: 168 GVGGAADETLRQSYRAARPELRPERTEYVTRVTPPGG 278
           GVG   D  +  S ++  P     R  Y TRV   GG
Sbjct: 170 GVGSDGDSRISTSSKSRFPSFGSSRGSYRTRVYGDGG 206


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,688,021
Number of Sequences: 5004
Number of extensions: 25645
Number of successful extensions: 111
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)