Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1119
(560 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_03_0146 + 10744403-10744603,10745199-10745834,10745967-107461... 33 0.16
10_01_0323 + 3530246-3530446,3531091-3531726,3531860-3532018,353... 31 0.48
01_06_0124 - 26692731-26697046,26698749-26698827,26698899-266989... 31 0.63
03_01_0423 + 3240224-3240394,3241464-3241628,3242322-3242339,324... 31 0.83
10_01_0274 - 2901033-2901778,2902475-2902634 29 1.9
12_01_0445 - 3513733-3513819,3514392-3514613,3514730-3514999,351... 29 3.4
01_01_0575 - 4271910-4272371,4272923-4272928,4272999-4273174,427... 29 3.4
01_01_0473 - 3478660-3480338,3480507-3480609 29 3.4
04_03_0036 - 9950353-9950379,9950753-9950791,9951021-9951194,995... 28 4.4
03_02_0300 - 7246312-7246662,7246757-7246831,7246920-7246993,724... 28 5.9
02_01_0224 - 1461924-1462227,1462602-1462798,1463059-1463213,146... 28 5.9
01_06_0040 - 25874308-25874611,25875743-25875822,25876764-258769... 28 5.9
>11_03_0146 +
10744403-10744603,10745199-10745834,10745967-10746125,
10746398-10747036,10748018-10748151,10748281-10748464,
10748882-10749217,10751659-10751945,10752863-10753253,
10753351-10753615,10753740-10753818,10754123-10754543
Length = 1243
Score = 33.1 bits (72), Expect = 0.16
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = +3
Query: 426 ASAGTSRPRRAGRKSQTKPKRKSRITSYG 512
AS G S R G +Q+KPKR+ R TS G
Sbjct: 32 ASGGASSSRAVGEATQSKPKRRRRATSAG 60
>10_01_0323 +
3530246-3530446,3531091-3531726,3531860-3532018,
3532276-3532569,3557747-3557941,3558875-3559095,
3559190-3559373,3559797-3559973,3561319-3561824,
3561880-3562060
Length = 917
Score = 31.5 bits (68), Expect = 0.48
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +3
Query: 429 SAGTSRPRRAGRKSQTKPKRKSRITSYG 512
S G S R G +Q+KPKR+ R TS G
Sbjct: 33 SGGASSSRAVGEAAQSKPKRRRRATSAG 60
>01_06_0124 -
26692731-26697046,26698749-26698827,26698899-26698955,
26699321-26699416
Length = 1515
Score = 31.1 bits (67), Expect = 0.63
Identities = 14/47 (29%), Positives = 28/47 (59%)
Frame = +1
Query: 7 KNNQELEVTNSELKEEVESLERQLALTQKALTQCKRKCDERIKRMSH 147
KNN+ELE+ NS L+ E+ ++ Q + + K +E+ +++S+
Sbjct: 761 KNNEELELANSNLQNELAMVQEQKNEAVASTVELGNKLEEQNQQISN 807
Score = 28.3 bits (60), Expect = 4.4
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +1
Query: 22 LEVTNSELKEEVESLERQL 78
LE N EL+E++ SLERQL
Sbjct: 864 LEQANEELREKISSLERQL 882
>03_01_0423 +
3240224-3240394,3241464-3241628,3242322-3242339,
3242494-3242836,3244138-3248540,3248928-3249107,
3249108-3250892,3251055-3252173
Length = 2727
Score = 30.7 bits (66), Expect = 0.83
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = +1
Query: 22 LEVTNSELKEEVESLERQLALTQKALTQCKRKCDERIKRMSHELS 156
LE T ELK+EV SLER++ + + L Q + + D ++ E S
Sbjct: 749 LENTVCELKKEVTSLERKIQIQVQELEQKREEADAMHAQLQDERS 793
Score = 27.9 bits (59), Expect = 5.9
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +1
Query: 22 LEVTNSELKEEVESLERQLALTQKALTQCKRKCDERIKRMSHELS 156
LE T ELK+EV SLE ++ + + L Q + + D ++ E S
Sbjct: 675 LENTVGELKKEVTSLELKIQIQAQELEQKREEADTVHAQLQDERS 719
>10_01_0274 - 2901033-2901778,2902475-2902634
Length = 301
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -2
Query: 67 PEIRPPPSARCW*PPTPGCSC 5
PE +PPPS + P PGCSC
Sbjct: 170 PEYQPPPSP-VYGTPAPGCSC 189
>12_01_0445 -
3513733-3513819,3514392-3514613,3514730-3514999,
3515033-3517110,3517649-3517976,3519136-3519255,
3519299-3519352,3520115-3520154,3520344-3520411
Length = 1088
Score = 28.7 bits (61), Expect = 3.4
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +1
Query: 1 ACKNNQELEVTNSELKEEVESLERQLALTQKALTQCKRK 117
+ + N LEV S L E+ SLE Q++ +AL +C R+
Sbjct: 222 SAQKNGSLEVQVSHLAEKNASLEVQVSRLDEALKECVRQ 260
>01_01_0575 -
4271910-4272371,4272923-4272928,4272999-4273174,
4274150-4275299
Length = 597
Score = 28.7 bits (61), Expect = 3.4
Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = -2
Query: 457 ALRGREVPAEARQV--LVAPLVQPLEQVLDELADQLAPHEG 341
A R RE+ A ++V VA V P VLD LAD LA +G
Sbjct: 130 AARRRELAAVRKEVGPAVAASVDPPRLVLDALADFLAAEDG 170
>01_01_0473 - 3478660-3480338,3480507-3480609
Length = 593
Score = 28.7 bits (61), Expect = 3.4
Identities = 14/50 (28%), Positives = 29/50 (58%)
Frame = +1
Query: 7 KNNQELEVTNSELKEEVESLERQLALTQKALTQCKRKCDERIKRMSHELS 156
K ++L+ ++SE+ + LE QLA + +CK++ + ++ SH+ S
Sbjct: 221 KLEEKLKDSHSEISSLQKELEGQLAHHDHEIEKCKKELEHVHEKYSHDKS 270
>04_03_0036 - 9950353-9950379,9950753-9950791,9951021-9951194,
9951287-9951415,9951782-9952012,9952655-9952732,
9953035-9953055,9953790-9953855,9953935-9954015,
9954148-9954920,9955461-9955654,9956723-9956817,
9958190-9958219,9958334-9958453,9959185-9959262,
9959428-9959505,9960459-9960488,9960614-9960739,
9961239-9961379,9963416-9963532,9963619-9963670,
9963759-9963890,9964668-9964720,9964816-9964911,
9965255-9965260,9965416-9965561,9966494-9966629,
9966885-9967038,9968017-9968154,9968268-9968614
Length = 1295
Score = 28.3 bits (60), Expect = 4.4
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -2
Query: 418 VLVAPLVQPLEQVLDELADQLAPH 347
++ P+V+PL QVL +ADQ + H
Sbjct: 1092 IVSVPVVRPLNQVLSSMADQESVH 1115
>03_02_0300 -
7246312-7246662,7246757-7246831,7246920-7246993,
7247247-7247334,7247464-7247615,7247702-7247861,
7247940-7248095,7248181-7248396,7248808-7249065,
7249816-7250019,7251334-7251423
Length = 607
Score = 27.9 bits (59), Expect = 5.9
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +1
Query: 25 EVTNSELKEEVESLERQLALTQKALTQCKRKCDERIKRMS 144
E+T +E +SL+ QLA L + K +ERIK+ S
Sbjct: 92 EITPKFKVDEKQSLKEQLAKVTPLLEDLRSKKEERIKQFS 131
>02_01_0224 -
1461924-1462227,1462602-1462798,1463059-1463213,
1464101-1464207,1464289-1464375,1465332-1465414,
1465959-1466027,1466332-1466658,1466744-1466957,
1467170-1467267,1467516-1467554,1467672-1468160
Length = 722
Score = 27.9 bits (59), Expect = 5.9
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +1
Query: 16 QELEVTNSELKEEVESLERQLALTQKALTQCKRKCDERIK-RMSHELSIK 162
+E + + + EVE L+R+L K + K +C E K R +L IK
Sbjct: 146 RERDAREAADRREVERLKRELNRVSKQMNDVKNECSELKKDRTRKDLEIK 195
>01_06_0040 -
25874308-25874611,25875743-25875822,25876764-25876996,
25877285-25877354
Length = 228
Score = 27.9 bits (59), Expect = 5.9
Identities = 19/61 (31%), Positives = 25/61 (40%)
Frame = -2
Query: 199 LRVSSAAPPTPQS*WTARGXXXXXXXXXXSCIELTLSASKLTVSPEIRPPPSARCW*PPT 20
LR APPT S T + C +T + T P +RPPPS+ P+
Sbjct: 162 LRAMRVAPPTVLSPHTRQPLPASALTMCPRCERITAA----TGPPAVRPPPSSAAAAAPS 217
Query: 19 P 17
P
Sbjct: 218 P 218
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,423,592
Number of Sequences: 37544
Number of extensions: 250220
Number of successful extensions: 1092
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1043
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1092
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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