Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1119
(560 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45) 32 0.37
SB_7846| Best HMM Match : CoCoA (HMM E-Value=0.00016) 31 0.64
SB_29610| Best HMM Match : Extensin_2 (HMM E-Value=2.3) 31 0.85
SB_19444| Best HMM Match : zf-C3HC4 (HMM E-Value=0.011) 30 1.1
SB_59431| Best HMM Match : Prefoldin (HMM E-Value=0.4) 30 1.5
SB_33134| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_23774| Best HMM Match : Kinesin (HMM E-Value=0) 29 2.0
SB_26831| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_11234| Best HMM Match : DSPc (HMM E-Value=2.4e-29) 29 2.6
SB_15063| Best HMM Match : Fez1 (HMM E-Value=0.17) 29 2.6
SB_34899| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00019) 29 3.4
SB_12891| Best HMM Match : DUF164 (HMM E-Value=0.072) 29 3.4
SB_9023| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_52003| Best HMM Match : BTB (HMM E-Value=1e-16) 28 6.0
SB_50755| Best HMM Match : Uso1_p115_C (HMM E-Value=0.81) 27 7.9
SB_31403| Best HMM Match : PAN (HMM E-Value=2.7e-18) 27 7.9
SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9
SB_8967| Best HMM Match : RVT_1 (HMM E-Value=7.6e-18) 27 7.9
>SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45)
Length = 4160
Score = 31.9 bits (69), Expect = 0.37
Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +1
Query: 13 NQELEVTNSELKEEVESLERQLALTQKALTQCKRKCDE-RIK 135
N +LE K V LE QL TQK TQC + DE R+K
Sbjct: 1441 NYDLERELEVAKRRVMVLEDQLTKTQKQRTQCNEQLDETRVK 1482
>SB_7846| Best HMM Match : CoCoA (HMM E-Value=0.00016)
Length = 1284
Score = 31.1 bits (67), Expect = 0.64
Identities = 16/41 (39%), Positives = 26/41 (63%)
Frame = +1
Query: 31 TNSELKEEVESLERQLALTQKALTQCKRKCDERIKRMSHEL 153
T S+L+EE+E L A QKAL Q K++ E+++ + E+
Sbjct: 1061 TISKLREEMEELRESSAAAQKALEQEKQQRLEKLEMNNQEI 1101
>SB_29610| Best HMM Match : Extensin_2 (HMM E-Value=2.3)
Length = 1353
Score = 30.7 bits (66), Expect = 0.85
Identities = 13/27 (48%), Positives = 20/27 (74%)
Frame = +3
Query: 423 RASAGTSRPRRAGRKSQTKPKRKSRIT 503
R SA +RPR++ RKS+ +P++ SR T
Sbjct: 472 RQSARQARPRQSSRKSKARPRQASRKT 498
Score = 28.7 bits (61), Expect = 3.4
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = +3
Query: 423 RASAGTSRPRRAGRKSQTKPKRKSR 497
+ +A +RPR+A RKS+ +P++ SR
Sbjct: 190 KQAARQARPRQASRKSKARPRQASR 214
Score = 27.5 bits (58), Expect = 7.9
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +3
Query: 432 AGTSRPRRAGRKSQTKPKRKSRIT 503
A +RPR++ RKS+ +P++ SR T
Sbjct: 857 ARQARPRQSSRKSKARPRQASRKT 880
>SB_19444| Best HMM Match : zf-C3HC4 (HMM E-Value=0.011)
Length = 434
Score = 30.3 bits (65), Expect = 1.1
Identities = 12/45 (26%), Positives = 25/45 (55%)
Frame = +1
Query: 16 QELEVTNSELKEEVESLERQLALTQKALTQCKRKCDERIKRMSHE 150
++L+V E+K + L+ QLA + L++ + +C++ R E
Sbjct: 352 KKLQVDEEEIKHRISELQNQLAKNKSKLSETQERCEKLEIRYDEE 396
>SB_59431| Best HMM Match : Prefoldin (HMM E-Value=0.4)
Length = 462
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +1
Query: 13 NQELEVTNSELKEEVESLERQLALTQKALTQCKRKCDER 129
NQ L+ SEL+ + ESLE Q+ +K + KR D++
Sbjct: 33 NQRLKQMVSELESQKESLESQILSKEKKIQTLKRFSDKK 71
>SB_33134| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2208
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +1
Query: 7 KNNQELEVTNSELKEEVESLERQLALTQKALTQCKRKCDERIKRMS 144
+N QEL N +L+EE+ LE L ++ L +E + R+S
Sbjct: 680 ENRQELVAENCQLREELADLENAKQLEERQLLARIETLEEDLSRLS 725
>SB_23774| Best HMM Match : Kinesin (HMM E-Value=0)
Length = 805
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 19 ELEVTNSELKEEVESLERQLALTQKALTQCKRKCDE 126
E + +ELK +E LE ++ KAL + K++ DE
Sbjct: 157 EADELRAELKSNIERLEGEIEGKNKALEEAKKRIDE 192
>SB_26831| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 932
Score = 29.1 bits (62), Expect = 2.6
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +1
Query: 40 ELKEEVESLERQLALTQKALTQCKRKCDERIKRMSHELS 156
+L E+ E+L+ LA + L + KRK E + HE S
Sbjct: 661 QLNEKNETLQNDLASRMEELGEVKRKLSETTDALQHETS 699
>SB_11234| Best HMM Match : DSPc (HMM E-Value=2.4e-29)
Length = 2072
Score = 29.1 bits (62), Expect = 2.6
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Frame = +1
Query: 7 KNNQELEVTNSELKEEVESLERQLALTQKALTQCKRKCDERI---KRMSHEL 153
K N+ L+ ELKEEVE+L+R+ + +K L K E + KRM ++L
Sbjct: 1230 KQNKRLQ----ELKEEVENLKRKNGIEEKRLRDDINKLSETLEKEKRMVNQL 1277
>SB_15063| Best HMM Match : Fez1 (HMM E-Value=0.17)
Length = 444
Score = 29.1 bits (62), Expect = 2.6
Identities = 12/28 (42%), Positives = 22/28 (78%)
Frame = +1
Query: 10 NNQELEVTNSELKEEVESLERQLALTQK 93
+N+ L + + LKE+VESL+R++A +Q+
Sbjct: 127 DNEFLITSQNRLKEQVESLQREIAQSQE 154
>SB_34899| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00019)
Length = 1136
Score = 28.7 bits (61), Expect = 3.4
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Frame = +1
Query: 1 ACKNNQELEVTNSELKEEVESLERQLALTQKALTQCKR--KCDE-RIKRMSHE 150
A L+ TN+ LKE + L++Q+ + +L K+ KC+E + K+++ E
Sbjct: 33 ASDRENHLQKTNASLKEIISGLKKQVEELENSLNSNKQSSKCEEKKFKQINSE 85
>SB_12891| Best HMM Match : DUF164 (HMM E-Value=0.072)
Length = 416
Score = 28.7 bits (61), Expect = 3.4
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +1
Query: 40 ELKEEVESLERQLALTQKALTQCKRKCDERIKRMSHELSIK 162
EL+EE++ + ++ + L Q K K +ER+K E+ K
Sbjct: 352 ELREELKQTKDRVVTLEAELEQLKAKSEERVKSQVDEIENK 392
>SB_9023| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 625
Score = 27.9 bits (59), Expect = 6.0
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Frame = +3
Query: 171 VGGAADETL--RQSYRAARPELRPERTEYV 254
V G +ETL R+ ++ RPE RP+R E V
Sbjct: 81 VPGVTEETLKKRKMFQKFRPEFRPKRNETV 110
>SB_52003| Best HMM Match : BTB (HMM E-Value=1e-16)
Length = 501
Score = 27.9 bits (59), Expect = 6.0
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +2
Query: 401 ERGDEDLARLCRDLAPAEGREEVTNETKAKITNYLLWQSLR 523
E+GDE L R C ++ + + V +++ +T LL+ LR
Sbjct: 208 EKGDEKLQRQCWEVICKKTADVVASDSFLNVTQQLLYNILR 248
>SB_50755| Best HMM Match : Uso1_p115_C (HMM E-Value=0.81)
Length = 205
Score = 27.5 bits (58), Expect = 7.9
Identities = 14/46 (30%), Positives = 27/46 (58%)
Frame = +1
Query: 7 KNNQELEVTNSELKEEVESLERQLALTQKALTQCKRKCDERIKRMS 144
K + E +KE ++SLE+Q+++ ++ L K + ER K+M+
Sbjct: 22 KAQRSAETREKAMKEHIDSLEKQISVLRREL---KAERSEREKQMT 64
>SB_31403| Best HMM Match : PAN (HMM E-Value=2.7e-18)
Length = 1051
Score = 27.5 bits (58), Expect = 7.9
Identities = 11/49 (22%), Positives = 29/49 (59%)
Frame = +1
Query: 7 KNNQELEVTNSELKEEVESLERQLALTQKALTQCKRKCDERIKRMSHEL 153
+ ELE T ++ ++E+E+L +L + + + + + + +E I ++ +L
Sbjct: 212 QQRDELENTVNKKQDEIEALNAKLEILTREVEEERHRYEEEIAHLTEQL 260
>SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3934
Score = 27.5 bits (58), Expect = 7.9
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = +1
Query: 19 ELEVTNSELKEEVESLERQ-LALT-QKALTQCKRKCDERIKRMSHEL 153
E+E+TN KEE + L + +AL+ +K +CK ER + HE+
Sbjct: 2318 EMEITNEAYKEENDRLRSEIIALSEEKCEVECKVSEAERQEVKLHEV 2364
>SB_8967| Best HMM Match : RVT_1 (HMM E-Value=7.6e-18)
Length = 483
Score = 27.5 bits (58), Expect = 7.9
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +1
Query: 10 NNQELEVTNSELKEEVESL-ERQLALTQKALTQCKRK 117
+NQ E+T+ EL++ V SL ++Q LT C+ K
Sbjct: 2 HNQPAEITDDELRQNVRSLNKKQRYAYDIVLTWCRSK 38
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,103,079
Number of Sequences: 59808
Number of extensions: 230330
Number of successful extensions: 1011
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1011
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1312894764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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