Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1119
(560 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g04600.1 68414.m00454 myosin, putative similar to myosin (GI:... 33 0.13
At2g33240.1 68415.m04072 myosin, putative similar to myosin (GI:... 32 0.30
At2g20290.1 68415.m02370 myosin, putative similar to myosin (GI:... 29 1.6
At3g05270.1 68416.m00575 expressed protein similar to endosome-a... 29 2.1
At1g80350.1 68414.m09406 katanin 1 (KTN1) identical to katanin 1... 29 2.1
At2g36010.3 68415.m04422 E2F transcription factor-3 (E2F3) ident... 29 2.8
At1g31730.1 68414.m03893 epsilon-adaptin, putative similar to SP... 29 2.8
At1g70620.2 68414.m08137 cyclin-related contains weak similarity... 28 3.7
At1g70620.1 68414.m08138 cyclin-related contains weak similarity... 28 3.7
At4g09950.1 68417.m01628 avirulence-responsive family protein / ... 28 4.9
At3g10230.1 68416.m01224 lycopene beta cyclase (LYC) identical t... 28 4.9
At1g79280.1 68414.m09242 expressed protein weak similarity to Nu... 27 6.5
At3g06530.1 68416.m00757 BAP28-related similar to Protein BAP28 ... 27 8.6
>At1g04600.1 68414.m00454 myosin, putative similar to myosin
(GI:499047) [Arabidopsis thaliana]
Length = 1730
Score = 33.1 bits (72), Expect = 0.13
Identities = 14/41 (34%), Positives = 26/41 (63%)
Frame = +1
Query: 16 QELEVTNSELKEEVESLERQLALTQKALTQCKRKCDERIKR 138
++L N +L + V SLE+++ T+K + R C+ER+K+
Sbjct: 1153 KKLADENKDLNDLVSSLEKKIDETEKKYEEASRLCEERLKQ 1193
Score = 28.3 bits (60), Expect = 3.7
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +1
Query: 19 ELEVTNSELKEEVESLERQLALTQKALTQCKRKCDERIK 135
+L N +LKE V SL+ ++ +++ + + +ERIK
Sbjct: 998 DLAAENEQLKESVSSLQNKIDESERKYEEISKISEERIK 1036
>At2g33240.1 68415.m04072 myosin, putative similar to myosin
(GI:433663) [Arabidopsis thaliana]; myosin my5A
(SP:Q02440) {Gallus gallus}
Length = 1770
Score = 31.9 bits (69), Expect = 0.30
Identities = 13/41 (31%), Positives = 26/41 (63%)
Frame = +1
Query: 19 ELEVTNSELKEEVESLERQLALTQKALTQCKRKCDERIKRM 141
+L N +L + V+ LER++ T+K + + C+ER+K++
Sbjct: 1147 KLAAENKDLYDLVDLLERKIDETEKKYEEASKLCEERLKQV 1187
>At2g20290.1 68415.m02370 myosin, putative similar to myosin
(GI:499047) [Arabidopsis thaliana]
Length = 1493
Score = 29.5 bits (63), Expect = 1.6
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +1
Query: 16 QELEVTNSELKEEVESLERQLALTQKALTQCKRKCDERIKR 138
++L N +LK V SLE ++ T+K + K+ +ER+K+
Sbjct: 978 EKLTSENEKLKSLVTSLELKIDETEKKFEETKKISEERLKK 1018
>At3g05270.1 68416.m00575 expressed protein similar to
endosome-associated protein (EEA1) (GI:1016368) [Homo
sapiens]; similar to smooth muscle myosin heavy chain
(GI:4417214) [Homo sapiens; contains Pfam profile
PF05911: Plant protein of unknown function (DUF869)
Length = 615
Score = 29.1 bits (62), Expect = 2.1
Identities = 14/41 (34%), Positives = 26/41 (63%)
Frame = +1
Query: 13 NQELEVTNSELKEEVESLERQLALTQKALTQCKRKCDERIK 135
NQELE+ E +++E L+RQL Q L++ + + E+++
Sbjct: 407 NQELELLLGESGKQMEDLQRQLNKAQVNLSELETRRAEKLE 447
>At1g80350.1 68414.m09406 katanin 1 (KTN1) identical to katanin 1
(KTN1) [Arabidopsis thaliana] GI:14133602
Length = 523
Score = 29.1 bits (62), Expect = 2.1
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +2
Query: 374 IEDLFERLHERGDEDLARLCRDLAPAEGREEVTNETKAKITN 499
IED+ R +DL +CRD + R ++ +T+ +I N
Sbjct: 437 IEDVARRTEGYSGDDLTNVCRDASMNGMRRKIAGKTRDEIKN 478
>At2g36010.3 68415.m04422 E2F transcription factor-3 (E2F3)
identical to E2F transcription factor-3 E2F3
[Arabidopsis thaliana] gi|10443853|gb|AAG17610
Length = 485
Score = 28.7 bits (61), Expect = 2.8
Identities = 15/48 (31%), Positives = 31/48 (64%)
Frame = +1
Query: 1 ACKNNQELEVTNSELKEEVESLERQLALTQKALTQCKRKCDERIKRMS 144
AC +++ +V+ +L+ E+E+ LAL ++AL R+ +ER++ +S
Sbjct: 235 ACPGDEDADVSVLQLQAEIEN----LALEEQALDNQIRQTEERLRDLS 278
>At1g31730.1 68414.m03893 epsilon-adaptin, putative similar to
SP|Q9UPM8 Adapter-related protein complex 4 epsilon 1
subunit (Epsilon subunit of AP-4) (AP-4 adapter complex
epsilon subunit) {Homo sapiens}; contains Pfam profile:
PF01602 Adaptin N terminal region
Length = 938
Score = 28.7 bits (61), Expect = 2.8
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +3
Query: 150 AVHQD*GVGGAADETLRQSYRAARPELRPERTEYVTRVTPPGGLRSR 290
+ H D GVG ++ + R SY +PE+ PE+ + GG SR
Sbjct: 748 STHSDAGVGSSSSKP-RSSYEPKKPEIDPEKQRLAASLF--GGSSSR 791
>At1g70620.2 68414.m08137 cyclin-related contains weak similarity to
Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide
I) [Bos taurus]
Length = 884
Score = 28.3 bits (60), Expect = 3.7
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +1
Query: 265 RPPGGCAPADAPQHELHHIRLTLLVPLHEEPAGRPA 372
RPP G P P H+ + + VP +P G PA
Sbjct: 12 RPPSGPPPPTDPYHQYYQHQARPPVPPPTQPGGPPA 47
>At1g70620.1 68414.m08138 cyclin-related contains weak similarity to
Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide
I) [Bos taurus]
Length = 897
Score = 28.3 bits (60), Expect = 3.7
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +1
Query: 265 RPPGGCAPADAPQHELHHIRLTLLVPLHEEPAGRPA 372
RPP G P P H+ + + VP +P G PA
Sbjct: 12 RPPSGPPPPTDPYHQYYQHQARPPVPPPTQPGGPPA 47
>At4g09950.1 68417.m01628 avirulence-responsive family protein /
avirulence induced gene (AIG1) family protein similar to
AIG1 protein SP:P54120 [Arabidopsis thaliana]; contains
Pfam PF04548: AIG1 family;
Length = 336
Score = 27.9 bits (59), Expect = 4.9
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +1
Query: 25 EVTNSELKEEVESLERQLALTQKALTQCKRKCDERIKRMSHEL 153
E +++LKE +E ++ QLA Q + ++K +E K S E+
Sbjct: 266 EKISNQLKESLEDVKEQLAKAQAEREETEKKMNEIQKLSSDEI 308
>At3g10230.1 68416.m01224 lycopene beta cyclase (LYC) identical to
lycopene beta cyclase GI:1399183|GB:AAB53337
[Arabidopsis thaliana]
Length = 501
Score = 27.9 bits (59), Expect = 4.9
Identities = 18/64 (28%), Positives = 29/64 (45%)
Frame = +2
Query: 275 GAALPQMHHSMSYITSDSRCSCPFMRSQLVGQLIEDLFERLHERGDEDLARLCRDLAPAE 454
G +H S Y+ + + + P + + +V L L RGD+ A + RDL P E
Sbjct: 354 GGTAGMVHPSTGYMVARTLAAAPIVANAIVRYLGSPSSNSL--RGDQLSAEVWRDLWPIE 411
Query: 455 GREE 466
R +
Sbjct: 412 RRRQ 415
>At1g79280.1 68414.m09242 expressed protein weak similarity to
Nucleoprotein TPR (Swiss-Prot:P12270) [Homo sapiens]
Length = 2111
Score = 27.5 bits (58), Expect = 6.5
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +1
Query: 40 ELKEEVESLERQLALTQKALTQCKRKCDERIKRM 141
+ K+ + + +++L +K LT CK+ ER KR+
Sbjct: 1400 DCKKVLLEKQNKISLLEKELTNCKKDLSEREKRL 1433
>At3g06530.1 68416.m00757 BAP28-related similar to Protein BAP28
(Swiss-Prot:Q9H583) [Homo sapiens]
Length = 1830
Score = 27.1 bits (57), Expect = 8.6
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = -2
Query: 448 GREVPAEARQVLVAPLVQPLEQVLDELADQLAPHEG 341
GR AE + ++++ LV LE V+D+L L PH G
Sbjct: 1413 GRNATAEEQLLMLSVLVT-LEAVIDKLGGFLNPHLG 1447
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,687,554
Number of Sequences: 28952
Number of extensions: 163722
Number of successful extensions: 701
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1072696904
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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