Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1118
         (636 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    29   0.74 
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos...    26   4.0  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   5.2  
SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe...    26   5.2  
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    25   6.9  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.1  
SPAC14C4.13 |rad17||RFC related checkpoint protein Rad17|Schizos...    25   9.1  

>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 28.7 bits (61), Expect = 0.74
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = -1

Query: 147 LKY*LAKTNITHEHRPDPAPDRIRFPSKPDTPRSSEPILIPKLRIQFAD 1
           ++Y   K+++T E + D  P R R    P  P SSE  L P   +  AD
Sbjct: 408 MRYLDLKSDLTVEKKSDIYPSRARISISPMLPTSSEDNLHPLQPLTTAD 456


>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 115 ARTSTRPGTGPHPLPVQTRHAPV 47
           A+ S  P   P PL +QTR AP+
Sbjct: 410 AQFSPYPAVAPSPLALQTRGAPI 432


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -3

Query: 103  TRPGTGPHPLPVQTRHAPVLRANPYSEVTDPI 8
            +RP T P P P + + APV + +    V  PI
Sbjct: 980  SRPRTAPIPEPEEQKKAPVEKKDAEKSVQAPI 1011


>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 251 IRGRPENAGPDPVRNVRRFSRV 186
           I GRPEN G   ++N+ R S+V
Sbjct: 217 IPGRPENGGNCDIKNLSRGSKV 238


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = -2

Query: 506 GYLKRVIVTPAVYPRLLEFLHVDIQST 426
           G+++R+ V    YP LLE+L++ + S+
Sbjct: 76  GFIERISVILRDYPDLLEYLNIFLPSS 102


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -2

Query: 500  LKRVIVTPAVYPRLLEFLHVDIQSTGQKSHC 408
            L + IVT + + RLLE+L  D  S  Q S C
Sbjct: 1789 LTKRIVTLSDHYRLLEYLLKDESSCSQASQC 1819


>SPAC14C4.13 |rad17||RFC related checkpoint protein
           Rad17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 606

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = -1

Query: 279 ETDTTLRLEDPRKAGERGSGSSPKRKTIFASVILNIYSF*GRI 151
           ET   L L D     +RG  +  K+K IF   I ++  F G +
Sbjct: 167 ETYPELELMDSNNIQKRGKNAQGKKKFIFLDEIPHLSKFNGSL 209


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,645,238
Number of Sequences: 5004
Number of extensions: 52499
Number of successful extensions: 123
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)