Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1118
         (636 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,890...    29   3.1  
03_04_0090 + 17228253-17228403,17229062-17229129,17229238-172309...    29   3.1  
05_04_0196 - 18964927-18965218,18965337-18965503,18966182-189663...    28   5.4  
12_01_0655 + 5546293-5546478,5546760-5546877,5550697-5550776,555...    28   7.1  
08_02_1002 + 23439642-23440046,23440558-23440761,23440874-234409...    28   7.1  
04_04_0433 + 25163111-25163471,25163943-25164154,25164420-251647...    28   7.1  
08_01_0025 - 184899-185384,185707-185940,187156-187341,188108-18...    27   9.4  
05_03_0250 + 10955281-10955419,10955524-10955727,10955985-109560...    27   9.4  

>06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,
            8905437-8905690,8905785-8908799,8908889-8909001,
            8909975-8910164,8910399-8910512,8910591-8910698,
            8910941-8911073,8911206-8911408,8911626-8911826
          Length = 1889

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +1

Query: 511  PRHLISDAHEWINEIPTVPIYYLAKPQPRERAWENQRGKKTL 636
            PR +  D  EW N  PT+   ++ + +PRE     Q+ K  +
Sbjct: 1397 PRTVECDEGEWYNNFPTIDENHVQRNKPREEQIFQQKLKPAI 1438


>03_04_0090 +
           17228253-17228403,17229062-17229129,17229238-17230902,
           17231002-17231143,17231648-17232399
          Length = 925

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -3

Query: 82  HPLPVQTRHAPVLRANP 32
           H +PVQ  H+PVL+ NP
Sbjct: 340 HSVPVQKNHSPVLKTNP 356


>05_04_0196 -
           18964927-18965218,18965337-18965503,18966182-18966328,
           18966419-18966650,18968087-18968241
          Length = 330

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 21/72 (29%), Positives = 32/72 (44%)
 Frame = -1

Query: 246 RKAGERGSGSSPKRKTIFASVILNIYSF*GRIILKY*LAKTNITHEHRPDPAPDRIRFPS 67
           RK  E G GSSP   + F++ +L   S     IL Y L +  +  +   DP  D      
Sbjct: 195 RKNAEAGGGSSPVALSAFSAFLLGAISKSVATILTYPLIRCKVMIQ-AADPDEDDDDESE 253

Query: 66  KPDTPRSSEPIL 31
           +P   +S + +L
Sbjct: 254 RPGKSKSPKTML 265


>12_01_0655 +
           5546293-5546478,5546760-5546877,5550697-5550776,
           5551329-5552345,5552523-5553344,5553528-5553800
          Length = 831

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = +2

Query: 305 CTTAVQRSAQNWHGQGESDCLIKTKHCDGPRGC*RNVISAQCS 433
           C T   RS  N H   +  CL+  +H     G   NVI  +CS
Sbjct: 242 CDTERARSDTNEHNIYDGCCLLDVQHTQSFPGNGANVIPTKCS 284


>08_02_1002 +
           23439642-23440046,23440558-23440761,23440874-23440990,
           23441116-23441511,23441586-23441938,23442067-23442187,
           23442602-23442781,23442813-23442896,23444398-23444523,
           23445286-23445588
          Length = 762

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -2

Query: 137 NSLKRT*RTNIDQTRHRTASASRPNPTRPGPQSQS 33
           +SLKR   TN+ QT  RT  +      RPG ++QS
Sbjct: 310 SSLKRV--TNVKQTPRRTIPSMNHGGDRPGKENQS 342


>04_04_0433 +
           25163111-25163471,25163943-25164154,25164420-25164701,
           25164794-25164916,25165511-25165664,25165754-25165965,
           25166143-25166212,25166294-25166424
          Length = 514

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = +2

Query: 305 CTTAVQRSAQNWHGQGESDCLIKTKHCDGPRGC-*RNVISAQCS 433
           CT++ +R A  W G G    L    HC  P       V+S +CS
Sbjct: 26  CTSSSRRRASPWGGAGRLIRLRLRGHCPSPASARAARVVSPRCS 69


>08_01_0025 -
           184899-185384,185707-185940,187156-187341,188108-188158
          Length = 318

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 368 LDSRIPLVRASSELTVERRSYRIVPIAHETKPTRP 264
           LD+ IP+ R   E + E R   I+P  +   P+ P
Sbjct: 274 LDNEIPITRTKIESSSEVRDLEILPTGNAALPSSP 308


>05_03_0250 +
           10955281-10955419,10955524-10955727,10955985-10956065,
           10956147-10956287,10956378-10956410,10956809-10956909,
           10957282-10957912,10959378-10959514
          Length = 488

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/53 (26%), Positives = 24/53 (45%)
 Frame = -3

Query: 160 RPHYIKILTR*NEHNARTSTRPGTGPHPLPVQTRHAPVLRANPYSEVTDPICR 2
           +PH+ ++     +HN  ++ +PG   H  P   RH   + +  Y    D  CR
Sbjct: 168 QPHHTQL----RQHNPTSAAQPGGDDHRQPFPGRHRRTIFSPLYLGGPDQTCR 216


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,925,662
Number of Sequences: 37544
Number of extensions: 408746
Number of successful extensions: 1433
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1433
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)