Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1118
         (636 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr...    29   2.1  
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re...    29   2.1  
U64833-8|AAB04820.1|  432|Caenorhabditis elegans Hypothetical pr...    29   3.7  
AF067622-4|ABD63224.1|  338|Caenorhabditis elegans Hypothetical ...    28   4.9  
AF067622-3|ABD63225.1|  447|Caenorhabditis elegans Hypothetical ...    28   4.9  
AC024843-6|AAF60844.3|  525|Caenorhabditis elegans Hypothetical ...    27   8.5  

>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical
           protein F29D11.1 protein.
          Length = 4753

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = +2

Query: 338 WHGQGESDCLIKTKHCDGPRGC*RNVISAQCSECQREEIQASAG 469
           W+  G   C+ + K CDG + C       QCS+     +   AG
Sbjct: 267 WNCPGTGHCIDQLKLCDGSKDCADGADEQQCSQNLCPSLGCQAG 310


>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL
           receptor-related protein protein.
          Length = 4753

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = +2

Query: 338 WHGQGESDCLIKTKHCDGPRGC*RNVISAQCSECQREEIQASAG 469
           W+  G   C+ + K CDG + C       QCS+     +   AG
Sbjct: 267 WNCPGTGHCIDQLKLCDGSKDCADGADEQQCSQNLCPSLGCQAG 310


>U64833-8|AAB04820.1|  432|Caenorhabditis elegans Hypothetical
           protein B0507.3 protein.
          Length = 432

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -1

Query: 96  PAPDRIRFPSKPDTPRSSEPILIPKLRI 13
           P P  ++  SKP TP  + P+L+P++ +
Sbjct: 324 PNPAMVQKSSKPSTPIPAPPVLVPQVEL 351


>AF067622-4|ABD63224.1|  338|Caenorhabditis elegans Hypothetical
           protein F33E11.6a protein.
          Length = 338

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 116 RTNIDQTRHRTASASRPNPTRPGPQSQSL 30
           +TNI Q+R  +    +P  TRPGP   +L
Sbjct: 213 QTNIIQSRRNSWKVMKPEATRPGPYPVAL 241


>AF067622-3|ABD63225.1|  447|Caenorhabditis elegans Hypothetical
           protein F33E11.6b protein.
          Length = 447

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 116 RTNIDQTRHRTASASRPNPTRPGPQSQSL 30
           +TNI Q+R  +    +P  TRPGP   +L
Sbjct: 213 QTNIIQSRRNSWKVMKPEATRPGPYPVAL 241


>AC024843-6|AAF60844.3|  525|Caenorhabditis elegans Hypothetical
           protein Y61A9LA.3b protein.
          Length = 525

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = +3

Query: 237 RPSADLLAVRSCRFRFVRDRHDSVRPPFNGQLRTGTDKGN 356
           +P       ++ R +F +  H  + PP  G++R   D GN
Sbjct: 402 KPPPPQAIYQAARIQFFQSLHTLIPPPIFGKMRKCVDSGN 441


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,064,749
Number of Sequences: 27780
Number of extensions: 313124
Number of successful extensions: 894
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)