Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1118
         (636 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g28250.1 68418.m03425 Ulp1 protease family protein contains P...    29   2.0  
At5g07700.1 68418.m00883 myb family transcription factor (MYB76)...    29   2.0  
At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S...    29   3.4  
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str...    29   3.4  
At5g16980.1 68418.m01989 NADP-dependent oxidoreductase, putative...    28   4.5  
At1g76965.1 68414.m08961 glycine-rich protein                          28   4.5  
At2g20760.1 68415.m02440 expressed protein                             27   7.9  

>At5g28250.1 68418.m03425 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain
          Length = 939

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -2

Query: 143 NTNSLKRT*RTNIDQTRHRTASASRPNPTRPGPQS 39
           NT  L+R  +  +  TR  TASA+  N T+P P++
Sbjct: 373 NTVGLRRKQKIPVVDTRTSTASAAAGNGTKPNPEA 407


>At5g07700.1 68418.m00883 myb family transcription factor (MYB76)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain
          Length = 338

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -2

Query: 161 EAALY*NTNSLKRT*RTNIDQTRHRTASASRPNPTRP 51
           E   Y NT+  KR     ID   H+  ++S PNP  P
Sbjct: 103 EVKNYWNTHLKKRLIDDGIDPVTHKPLASSNPNPVEP 139


>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
           roibosomal protein L4, Arabidopsis thaliana,
           EMBL:CAA79104
          Length = 407

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 9/37 (24%), Positives = 22/37 (59%)
 Frame = -2

Query: 488 IVTPAVYPRLLEFLHVDIQSTGQKSHCVNTREGHRNA 378
           ++T  V P ++ F+H  I +  ++ + V+ + GH+ +
Sbjct: 33  VMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTS 69


>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
           similarity to 60S ribosomal protein L1 GB:P49691
          Length = 406

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 9/37 (24%), Positives = 22/37 (59%)
 Frame = -2

Query: 488 IVTPAVYPRLLEFLHVDIQSTGQKSHCVNTREGHRNA 378
           ++T  V P ++ F+H  I +  ++ + V+ + GH+ +
Sbjct: 32  VMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTS 68


>At5g16980.1 68418.m01989 NADP-dependent oxidoreductase, putative
           strong similarity to probable NADP-dependent
           oxidoreductase (zeta-crystallin homolog) P1
           [SP|Q39172][gi:886428] and P2 [SP|Q39173][gi:886430],
           Arabidopsis thaliana
          Length = 239

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 229 RVRIQSET*DDFRECHIKYIQFLRPH 152
           R+RIQ     DF + + K+++FL PH
Sbjct: 172 RIRIQGFVVSDFYDEYSKFLEFLHPH 197


>At1g76965.1 68414.m08961 glycine-rich protein 
          Length = 158

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -1

Query: 99  DPAPDRIRFPSKPDTPRSSEPILIPKLRIQFAD 1
           DP    + FP KP+ P    P  +P+L + F D
Sbjct: 92  DPGAAIVVFPKKPEEPVKVVPTPMPQLNLFFGD 124


>At2g20760.1 68415.m02440 expressed protein
          Length = 338

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = -1

Query: 132 AKTNITHEHRPDPAPDRIRFPSKPDTPRSSE 40
           A   +T E RP PA D     +KPD   S E
Sbjct: 292 ADPKVTEEKRPSPAKDASVETAKPDAAASGE 322


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,404,967
Number of Sequences: 28952
Number of extensions: 297896
Number of successful extensions: 850
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)