Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1117
         (309 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   3.0  
AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.            21   3.0  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    21   3.0  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   3.9  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   3.9  
EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450 ...    20   5.2  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    20   5.2  
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    20   6.8  
AF264720-1|AAF75272.1|  126|Tribolium castaneum putative cytochr...    20   6.8  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    20   6.8  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.0 bits (42), Expect = 3.0
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -3

Query: 130 PDLSAASSXHFGLPRRTLVFKDEG 59
           P +S++     G      VFKDEG
Sbjct: 2   PHVSSSGGDDLGSTDEVKVFKDEG 25



 Score = 20.6 bits (41), Expect = 3.9
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = -1

Query: 255 FQGPQRVSGHRRKC 214
           F GP R++   R+C
Sbjct: 602 FHGPHRLAARSRRC 615



 Score = 19.4 bits (38), Expect = 9.0
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = +2

Query: 287 AGSYPYP 307
           AG YPYP
Sbjct: 169 AGQYPYP 175


>AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.
          Length = 150

 Score = 21.0 bits (42), Expect = 3.0
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = +1

Query: 16  FLFRNPAAEPFQ*SFPRL*KRVFDGVTQSGXKTPPRG 126
           F+   P+   F  + P L   +  G + S   TPP G
Sbjct: 60  FINSQPSMAEFMTALPHLSGDMTHGASISPQNTPPAG 96


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 21.0 bits (42), Expect = 3.0
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = +1

Query: 16  FLFRNPAAEPFQ*SFPRL*KRVFDGVTQSGXKTPPRG 126
           F+   P+   F  + P L   +  G + S   TPP G
Sbjct: 60  FINSQPSMAEFMTALPHLSGDMTHGASISPQNTPPAG 96


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 20.6 bits (41), Expect = 3.9
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 264 RDVRGDVAPVRTHIR 308
           +D++G  APV  H+R
Sbjct: 180 KDLQGISAPVEAHLR 194


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 20.6 bits (41), Expect = 3.9
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = -1

Query: 255 FQGPQRVSGHRRKC 214
           F GP R++   R+C
Sbjct: 494 FHGPHRLAARSRRC 507



 Score = 19.4 bits (38), Expect = 9.0
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = +2

Query: 287 AGSYPYP 307
           AG YPYP
Sbjct: 61  AGQYPYP 67


>EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450
           protein.
          Length = 493

 Score = 20.2 bits (40), Expect = 5.2
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = -1

Query: 306 GYGYEPARHLHVHPSPEFQGPQRVSGHRRK 217
           G  Y+P      +P PE   P+R S   +K
Sbjct: 395 GLHYDP----EYYPDPEKYDPERFSDENKK 420


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 20.2 bits (40), Expect = 5.2
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 176 RIPWNANAQAEKK 138
           +IPW+ NA+A  K
Sbjct: 330 QIPWDKNAEALAK 342


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 19.8 bits (39), Expect = 6.8
 Identities = 9/27 (33%), Positives = 12/27 (44%)
 Frame = -3

Query: 277 PRTSLT*ISRSAESIRTPPQMRCSSRS 197
           P T L+      +   TPP + CS  S
Sbjct: 44  PETELSDSDCDLDVTGTPPPLDCSKNS 70


>AF264720-1|AAF75272.1|  126|Tribolium castaneum putative cytochrome
           P450 monooxigenaseCYP4Q1 protein.
          Length = 126

 Score = 19.8 bits (39), Expect = 6.8
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = -1

Query: 297 YEPARHLHVHPSPEFQGPQR 238
           Y+  R+  ++P PE   P R
Sbjct: 92  YDVHRNADIYPDPEKLDPDR 111


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 19.8 bits (39), Expect = 6.8
 Identities = 5/17 (29%), Positives = 9/17 (52%)
 Frame = -1

Query: 303 YGYEPARHLHVHPSPEF 253
           + Y P  H   +P+P +
Sbjct: 76  WNYSPDNHFEQYPNPTY 92


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,779
Number of Sequences: 336
Number of extensions: 1387
Number of successful extensions: 13
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 49
effective length of database: 106,121
effective search space used:  5624413
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)