Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1117
         (309 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    27   0.64 
SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2 |Sc...    27   0.84 
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa...    25   1.9  
SPBC16E9.06c |uvi31||BolA domain UV inducedv protein Uvi31|Schiz...    25   2.6  
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ...    24   4.5  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    24   5.9  
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc...    24   5.9  
SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit Swd2|Schizosa...    24   5.9  
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos...    24   5.9  
SPAC17H9.13c |||glutamate 5-kinase |Schizosaccharomyces pombe|ch...    24   5.9  
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p...    23   7.9  

>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 121

 Score = 27.1 bits (57), Expect = 0.64
 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
 Frame = -3

Query: 217 MRCSSRSEPYLPSI-GFHGTRTLRQKRKLFPDLSAASSXHFGLPRRT 80
           MR +   E Y+  + G H   T  Q   LF D     + H  L RRT
Sbjct: 1   MRPAKSVEGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRT 47


>SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 334

 Score = 26.6 bits (56), Expect = 0.84
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +3

Query: 165 PWNPIEGRYGSEREEHRICGGVRILSADLEIQVRDVRGDVAP 290
           P+ P+EG Y + ++ HRI    R   A LE ++R V+    P
Sbjct: 3   PYEPVEGLYVNAKQYHRILKR-REARAKLEERLRGVQTTKKP 43


>SPBC1289.12 |usp109||U1 snRNP-associated protein
           Usp109|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 352

 Score = 25.4 bits (53), Expect = 1.9
 Identities = 16/44 (36%), Positives = 18/44 (40%)
 Frame = -2

Query: 278 STYIPHLNFKVRREYPDTAANAVLFAFRTISPFYRIPWNANAQA 147
           STY P L   V     D   N     F  I+P+Y   WN  A A
Sbjct: 257 STYWPALAAPVYPSMKDVPNNPFT-PFSPINPYYAKSWNHTASA 299


>SPBC16E9.06c |uvi31||BolA domain UV inducedv protein
           Uvi31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 102

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -1

Query: 264 SPEFQGPQRVSGHRRKCGALR 202
           SPEF G  RV+ HR   G L+
Sbjct: 60  SPEFSGMSRVARHRLVYGLLK 80


>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 905

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = +3

Query: 3   KGNPVPIPEPGSGTVSI 53
           K NPV I EPG G  SI
Sbjct: 202 KNNPVLIGEPGVGKTSI 218


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +3

Query: 12  PVPIPEPGSGTVS 50
           P PIP P +GTVS
Sbjct: 253 PPPIPPPSNGTVS 265


>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
           Fep1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 564

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 18/74 (24%), Positives = 26/74 (35%)
 Frame = +3

Query: 3   KGNPVPIPEPGSGTVSIIVPSSLKTSVRRGNPKWXEDAAERSGKSFLFCLSVRVPWNPIE 182
           K +P P+             +S  TS RR +    ED++     S  FC +      P+ 
Sbjct: 124 KASPTPLESKPQIVSDTTTETSNGTSRRRSSHNQHEDSSPPHEPSVTFCQNCATTNTPLW 183

Query: 183 GRYGSEREEHRICG 224
            R  S       CG
Sbjct: 184 RRDESGNPICNACG 197


>SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit
           Swd2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 357

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +3

Query: 36  SGTVSIIVPSSLKTSVRRGNPKWXEDAAERSGKSFLF 146
           SG+  + VPS + T  + GN  +   A       FLF
Sbjct: 232 SGSELLRVPSKVSTKTQDGNLTYYASACMSPDSKFLF 268


>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +3

Query: 126 SGKSFLFCLSVRVPWNPIEGRYGSERE 206
           +G   LFCLS+   WN    +Y   R+
Sbjct: 478 AGSLQLFCLSIIKRWNQTGQKYSDLRD 504


>SPAC17H9.13c |||glutamate 5-kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 402

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -3

Query: 79  LVFKDEGTIIETVPLPGSGIGTG 11
           L   D   +   V  PGSG+GTG
Sbjct: 197 LKIHDTSMVNANVSTPGSGVGTG 219


>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1028

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
 Frame = -2

Query: 293 NRRDIST-YIP-HLNFKVRREYPDT 225
           +RR IS  Y+  HLNF VRR   DT
Sbjct: 444 DRRAISNPYVSNHLNFNVRRVKSDT 468


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,322,896
Number of Sequences: 5004
Number of extensions: 23463
Number of successful extensions: 76
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 79841814
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)