Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1117
(309 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_1013 - 7931756-7935109 31 0.14
02_02_0346 - 9214365-9214583,9214830-9214919,9215012-9215177,921... 29 0.74
12_02_0969 - 24936399-24936699,24936779-24936949,24937032-249378... 29 0.98
12_02_0096 - 13573612-13573632,13573846-13573884,13574160-135744... 28 1.7
05_03_0466 - 14362190-14362312,14362411-14362658,14363289-14363664 27 2.3
04_04_0759 - 27832340-27832480,27832568-27832593,27832759-27834154 27 2.3
01_05_0408 + 21888898-21890181,21891289-21891984,21892167-21893705 27 2.3
12_01_0801 + 7351171-7351198,7351383-7352020,7352098-7352559,735... 27 3.0
06_03_0262 + 18905352-18905481,18905570-18906003,18906082-189063... 27 3.0
06_02_0270 - 13613853-13614153,13614233-13614403,13614486-136153... 27 3.0
03_05_0088 + 20664580-20664696,20664796-20665218,20665297-206655... 27 3.0
02_03_0337 + 17898732-17899370,17899516-17899977,17900058-179006... 27 3.0
12_02_0407 - 18654134-18654172,18654913-18655803 27 4.0
03_04_0008 - 16274158-16274458,16274791-16275623,16275706-162761... 27 4.0
11_05_0087 + 18970741-18972702 26 5.2
09_04_0097 - 14573499-14574110,14574977-14575017,14575424-145756... 26 5.2
03_01_0563 + 4169144-4169516,4170362-4170648,4171339-4171576,417... 26 5.2
10_08_0919 + 21564245-21565699,21566876-21567022,21567170-215672... 26 6.9
07_03_0436 - 18188221-18188373,18189121-18189233,18189817-181898... 26 6.9
04_03_0473 - 16332870-16332947,16333013-16333474,16333615-163337... 26 6.9
04_01_0324 - 4305017-4305271,4305353-4305814,4305870-4306340 26 6.9
01_06_1389 - 36969414-36969436,36970027-36970394,36970474-369706... 26 6.9
09_02_0330 + 7321031-7321231,7321313-7321434,7321461-7322135,732... 25 9.2
07_01_0943 - 7959813-7960113,7960193-7960363,7960446-7961278,796... 25 9.2
04_03_0574 - 17338777-17339077,17339390-17340222,17340304-173407... 25 9.2
04_03_0205 + 12649724-12650191,12651493-12652025,12652114-126522... 25 9.2
03_04_0157 + 17791540-17791681,17792809-17792908,17793386-177934... 25 9.2
01_05_0044 + 17531005-17531739,17532624-17532956,17532968-17533027 25 9.2
01_03_0258 + 14309549-14309926 25 9.2
>06_01_1013 - 7931756-7935109
Length = 1117
Score = 31.5 bits (68), Expect = 0.14
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = -1
Query: 300 GYEPARHLHVHPSPEFQGPQRVSGHR 223
G+EP R + +HP+P+ + P R+ G +
Sbjct: 879 GWEPKRFITIHPTPKSKAPARILGSK 904
>02_02_0346 -
9214365-9214583,9214830-9214919,9215012-9215177,
9215601-9215911,9215944-9216566,9216779-9216968,
9217096-9217197,9217285-9217425,9217815-9218411,
9219126-9219286,9220709-9220824,9221538-9221654,
9221746-9221808,9221879-9221949
Length = 988
Score = 29.1 bits (62), Expect = 0.74
Identities = 21/61 (34%), Positives = 26/61 (42%)
Frame = -3
Query: 235 IRTPPQMRCSSRSEPYLPSIGFHGTRTLRQKRKLFPDLSAASSXHFGLPRRTLVFKDEGT 56
I+ P M S + + GFHG L+ KL PDL + HF LVF G
Sbjct: 188 IKLYPHM--SGEQKRLIEGAGFHGLVDLKCS-KLRPDLCSWLMEHFNPATNQLVFPGRGA 244
Query: 55 I 53
I
Sbjct: 245 I 245
>12_02_0969 -
24936399-24936699,24936779-24936949,24937032-24937852,
24937946-24938407,24938486-24938890
Length = 719
Score = 28.7 bits (61), Expect = 0.98
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -1
Query: 273 VHPSPEFQGPQRVSGHRRKCGALRVP 196
VHP+P Q S HR C ++ VP
Sbjct: 248 VHPTPRAQHDTNPSHHRSSCASIEVP 273
>12_02_0096 -
13573612-13573632,13573846-13573884,13574160-13574493,
13574660-13574830,13574913-13575730,13575812-13576114,
13576352-13577085,13577174-13577303
Length = 849
Score = 27.9 bits (59), Expect = 1.7
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -1
Query: 273 VHPSPEFQGPQRVSGHRRKCGALRVP 196
VHP+P Q S HR C + +VP
Sbjct: 348 VHPTPRAQHDASPSQHRSSCASTKVP 373
>05_03_0466 - 14362190-14362312,14362411-14362658,14363289-14363664
Length = 248
Score = 27.5 bits (58), Expect = 2.3
Identities = 23/70 (32%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Frame = +3
Query: 6 GNPVPIPEPGSGTVSIIVPSSLKTSVRRGNPKWXEDAAERSGKSFLFCLSVRVPWNPIEG 185
G V + PGSG V +IVP V G W R + F F + +E
Sbjct: 13 GCGVRVIVPGSGGVQVIVPGG--GGVHPGG-DWRRTTKSRRNR-FRFSARPEIKVAALEE 68
Query: 186 RYGS-EREEH 212
+GS E EEH
Sbjct: 69 EHGSGEEEEH 78
>04_04_0759 - 27832340-27832480,27832568-27832593,27832759-27834154
Length = 520
Score = 27.5 bits (58), Expect = 2.3
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -1
Query: 306 GYGYEPARHLHVHPSPEFQGPQRVSGHRRKCGALRVP 196
G+ +EP L HPSP+ GPQ ++ G P
Sbjct: 23 GFRFEPKEELVEHPSPQ-PGPQAIASIASSDGEFSSP 58
>01_05_0408 + 21888898-21890181,21891289-21891984,21892167-21893705
Length = 1172
Score = 27.5 bits (58), Expect = 2.3
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -1
Query: 291 PARHLHVHPSPEFQGPQRVSGHRRKCGALRV 199
P+ H +H S P+R RR+CGAL +
Sbjct: 18 PSHHRLLHRSSLLPFPRRHHHRRRRCGALSI 48
>12_01_0801 +
7351171-7351198,7351383-7352020,7352098-7352559,
7352641-7353105
Length = 530
Score = 27.1 bits (57), Expect = 3.0
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -1
Query: 273 VHPSPEFQGPQRVSGHRRKCGALRVP 196
VHP+P Q S HR C + VP
Sbjct: 335 VHPTPRAQHDASPSQHRSSCASTEVP 360
>06_03_0262 +
18905352-18905481,18905570-18906003,18906082-18906303,
18906381-18906842,18906935-18907755,18907838-18908008,
18908088-18908347,18908453-18908508,18908786-18908824,
18909711-18909764
Length = 882
Score = 27.1 bits (57), Expect = 3.0
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -1
Query: 273 VHPSPEFQGPQRVSGHRRKCGALRVP 196
VHP+P Q S HR C + VP
Sbjct: 375 VHPTPRAQHDASPSQHRSSCSSTEVP 400
>06_02_0270 -
13613853-13614153,13614233-13614403,13614486-13615318,
13615401-13615746,13615940-13616127,13616238-13616408
Length = 669
Score = 27.1 bits (57), Expect = 3.0
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -1
Query: 273 VHPSPEFQGPQRVSGHRRKCGALRVP 196
VHP+P Q S HR C + VP
Sbjct: 194 VHPTPRAQHDTSPSQHRSSCASTEVP 219
>03_05_0088 +
20664580-20664696,20664796-20665218,20665297-20665518,
20665597-20666058,20666140-20666300,20666422-20666973,
20667056-20667125,20667141-20667226,20667306-20667673,
20668002-20668018
Length = 825
Score = 27.1 bits (57), Expect = 3.0
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -1
Query: 273 VHPSPEFQGPQRVSGHRRKCGALRVP 196
VHP+P Q S HR C + VP
Sbjct: 367 VHPTPRAQHDASPSQHRSSCASTEVP 392
>02_03_0337 +
17898732-17899370,17899516-17899977,17900058-17900688,
17900819-17900888,17900971-17901141,17901221-17901479,
17901918-17901956,17902900-17902914
Length = 761
Score = 27.1 bits (57), Expect = 3.0
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -1
Query: 273 VHPSPEFQGPQRVSGHRRKCGALRVP 196
VHP+P Q S HR C + VP
Sbjct: 326 VHPTPRAQHDASPSQHRSSCASTEVP 351
>12_02_0407 - 18654134-18654172,18654913-18655803
Length = 309
Score = 26.6 bits (56), Expect = 4.0
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = +3
Query: 27 EPGSGTVSIIVPSSLKTSVRRGNPKWXEDAAERSGKSFLFCLSVRVPWNPIEGRY 191
E G+G ++++ PS+ +T P+ R + CLS ++PI GRY
Sbjct: 115 EEGTGRLTLVNPSTGETLAVPPPPRLPPKRRHRRAPLVVSCLS--FGYHPITGRY 167
>03_04_0008 -
16274158-16274458,16274791-16275623,16275706-16276167,
16276245-16276882,16277068-16277197
Length = 787
Score = 26.6 bits (56), Expect = 4.0
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -1
Query: 273 VHPSPEFQGPQRVSGHRRKCGALRVP 196
VHP+P Q S HR C + VP
Sbjct: 369 VHPTPRAQYDASPSQHRSSCASTEVP 394
>11_05_0087 + 18970741-18972702
Length = 653
Score = 26.2 bits (55), Expect = 5.2
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +3
Query: 156 VRVPWNPIEGRYGSEREEHR 215
VR P P+ GR+G RE R
Sbjct: 56 VRAPRRPLHGRHGHHREHRR 75
>09_04_0097 -
14573499-14574110,14574977-14575017,14575424-14575616,
14575697-14575837,14575970-14576197,14576297-14576552,
14576866-14577069,14577157-14577245,14577346-14577416,
14577498-14577579,14577653-14577715,14578018-14578155
Length = 705
Score = 26.2 bits (55), Expect = 5.2
Identities = 9/35 (25%), Positives = 20/35 (57%)
Frame = -1
Query: 294 EPARHLHVHPSPEFQGPQRVSGHRRKCGALRVPNH 190
+P + ++ +P+P+F+G S RK + ++ H
Sbjct: 476 KPKQSIYTYPAPDFRGKNHTSPVYRKLTSKQIVEH 510
>03_01_0563 +
4169144-4169516,4170362-4170648,4171339-4171576,
4172473-4172796,4172914-4172999,4173124-4173231,
4173315-4173619,4173733-4173960,4174109-4174877
Length = 905
Score = 26.2 bits (55), Expect = 5.2
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -3
Query: 241 ESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQK 143
+S R P R ++PYLPS G R LR+K
Sbjct: 205 QSTRELPTKRVFFSNKPYLPSETPPGLRELREK 237
>10_08_0919 +
21564245-21565699,21566876-21567022,21567170-21567286,
21567580-21568176
Length = 771
Score = 25.8 bits (54), Expect = 6.9
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = -3
Query: 133 FPDLSAASSXHFGLPRRTLVFKDEGTIIETVPLPGSG 23
F L+ + +GLP +L T++E P PG G
Sbjct: 287 FSPLAVQTCRAYGLPLLSLQSHANATLVEQPPAPGLG 323
>07_03_0436 -
18188221-18188373,18189121-18189233,18189817-18189889,
18189979-18190046,18190132-18190372,18191614-18191732,
18192977-18193028,18193178-18193192
Length = 277
Score = 25.8 bits (54), Expect = 6.9
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +3
Query: 3 KGNPVPIPEPGSGTVSIIVPSSLKTSVRRGNP 98
+G+P+P+ P SG + S + RRG P
Sbjct: 160 RGSPMPVSSPWSGGALVENNDSSASRKRRGGP 191
>04_03_0473 -
16332870-16332947,16333013-16333474,16333615-16333739,
16333953-16334022
Length = 244
Score = 25.8 bits (54), Expect = 6.9
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = -1
Query: 273 VHPSPEFQGPQRVSGHRRKCGALRVP 196
VHP P Q S HR C + VP
Sbjct: 178 VHPIPRAQHDASPSQHRSSCASTEVP 203
>04_01_0324 - 4305017-4305271,4305353-4305814,4305870-4306340
Length = 395
Score = 25.8 bits (54), Expect = 6.9
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = -1
Query: 273 VHPSPEFQGPQRVSGHRRKCGALRVP 196
VHP+P Q S HR C VP
Sbjct: 270 VHPTPRAQHDASPSQHRSSCAFTEVP 295
>01_06_1389 -
36969414-36969436,36970027-36970394,36970474-36970644,
36970727-36971559,36971642-36972103,36972182-36972915,
36973004-36973133
Length = 906
Score = 25.8 bits (54), Expect = 6.9
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = -1
Query: 273 VHPSPEFQGPQRVSGHRRKCGALRVP 196
+HP+P Q S HR C + VP
Sbjct: 401 MHPTPRAQHDPSPSQHRSSCASTEVP 426
>09_02_0330 +
7321031-7321231,7321313-7321434,7321461-7322135,
7322218-7322287,7322469-7322768
Length = 455
Score = 25.4 bits (53), Expect = 9.2
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -1
Query: 273 VHPSPEFQGPQRVSGHRRKCGALRVP 196
VHP+P Q S HR C + VP
Sbjct: 26 VHPTPCAQHDASPSQHRSSCASTEVP 51
>07_01_0943 -
7959813-7960113,7960193-7960363,7960446-7961278,
7961360-7961821,7961899-7962606
Length = 824
Score = 25.4 bits (53), Expect = 9.2
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -1
Query: 273 VHPSPEFQGPQRVSGHRRKCGALRV 199
VHP+P Q S HR C ++ V
Sbjct: 349 VHPTPRAQHDASPSQHRSSCASIEV 373
>04_03_0574 -
17338777-17339077,17339390-17340222,17340304-17340765,
17340843-17341030,17341244-17341576,17341665-17341796,
17342604-17342643
Length = 762
Score = 25.4 bits (53), Expect = 9.2
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -1
Query: 273 VHPSPEFQGPQRVSGHRRKCGALRVP 196
VHP+P Q S HR C + VP
Sbjct: 344 VHPTPCAQHDASPSQHRSSCASTEVP 369
>04_03_0205 +
12649724-12650191,12651493-12652025,12652114-12652239,
12652625-12652724,12652880-12652899,12653035-12653137,
12653213-12653351,12653448-12653662,12653772-12654320
Length = 750
Score = 25.4 bits (53), Expect = 9.2
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = -1
Query: 72 LKTRERLLKRFRCRV 28
L RERLLK FRC +
Sbjct: 488 LSMRERLLKEFRCSI 502
>03_04_0157 +
17791540-17791681,17792809-17792908,17793386-17793477,
17793562-17793620,17794135-17795637,17796478-17796720,
17796831-17797145,17797571-17797573,17798399-17798638,
17798975-17799259,17799335-17799556,17800105-17800266,
17800411-17800545,17802452-17802688,17802787-17802960,
17803692-17803934
Length = 1384
Score = 25.4 bits (53), Expect = 9.2
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +3
Query: 150 LSVRVPWN-PIEGRYGSE-REEHRICGGVRILSADLEIQVRDVRGD 281
LSV +PW P E + E ++ HR + +++A + + +R V GD
Sbjct: 455 LSVILPWTRPFE--FVKEFKQAHRREDDIALVNAGMRVYIRKVEGD 498
>01_05_0044 + 17531005-17531739,17532624-17532956,17532968-17533027
Length = 375
Score = 25.4 bits (53), Expect = 9.2
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -3
Query: 76 VFKDEGTIIETVPLPGSGIGTGL 8
+FK+E I+ V PG G G GL
Sbjct: 243 IFKEERFRIQGVQTPGGGYGKGL 265
>01_03_0258 + 14309549-14309926
Length = 125
Score = 25.4 bits (53), Expect = 9.2
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +3
Query: 123 RSGKSFLFCLSVRVPWNPIEGRYGSEREEHRICG 224
R G S++ + R P++ E RYG+ R+ + +CG
Sbjct: 42 RMGSSYVDDMRRRPPFS--EARYGAARKVYVVCG 73
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,428,393
Number of Sequences: 37544
Number of extensions: 190729
Number of successful extensions: 659
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 375959444
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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