Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1117
         (309 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC087794-3|AAG53700.1|  417|Caenorhabditis elegans Hypothetical ...    28   1.5  
U41019-1|AAM51510.1|  542|Caenorhabditis elegans Hypothetical pr...    27   2.0  
AL021488-2|CAA16367.2|  378|Caenorhabditis elegans Hypothetical ...    26   4.7  
U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical pr...    25   8.1  
AL132948-6|CAC51070.1|  395|Caenorhabditis elegans Hypothetical ...    25   8.1  
AF003135-11|AAK18987.2| 1406|Caenorhabditis elegans Hypothetical...    25   8.1  

>AC087794-3|AAG53700.1|  417|Caenorhabditis elegans Hypothetical
           protein Y32G9A.9 protein.
          Length = 417

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 16/58 (27%), Positives = 26/58 (44%)
 Frame = -3

Query: 211 CSSRSEPYLPSIGFHGTRTLRQKRKLFPDLSAASSXHFGLPRRTLVFKDEGTIIETVP 38
           C++   P+L  I    T+ +RQ   + P+L +A   H       + FK E     T+P
Sbjct: 80  CTTNFTPFLRPITVPVTKGVRQGDPISPNLFSACLEHVFRKLSCIEFKGEAEDYNTIP 137


>U41019-1|AAM51510.1|  542|Caenorhabditis elegans Hypothetical
           protein C04E7.4 protein.
          Length = 542

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -3

Query: 235 IRTPPQMRCSSRSEPYLPSIGFHGT 161
           I T  Q + SS  +P+LP++GF GT
Sbjct: 299 IVTISQGKASSLYDPHLPTVGFDGT 323


>AL021488-2|CAA16367.2|  378|Caenorhabditis elegans Hypothetical
           protein Y45F10A.4 protein.
          Length = 378

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 17/60 (28%), Positives = 27/60 (45%)
 Frame = +3

Query: 108 EDAAERSGKSFLFCLSVRVPWNPIEGRYGSEREEHRICGGVRILSADLEIQVRDVRGDVA 287
           +DAA+ +G       +VR PW  + G   S   E  I    + +  D+ I  + + G VA
Sbjct: 145 KDAADEAGTKIRGGQTVRCPWLLLGGVATSVAHESEIIKVDQAVPGDVLILTKPIGGQVA 204


>U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical
           protein F35A5.1 protein.
          Length = 1274

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 8/32 (25%), Positives = 16/32 (50%)
 Frame = +3

Query: 18  PIPEPGSGTVSIIVPSSLKTSVRRGNPKWXED 113
           P P+       ++ P+ +K  V++  P W +D
Sbjct: 866 PSPKKAEPNSPVVPPTPVKNPVKKWKPPWEDD 897


>AL132948-6|CAC51070.1|  395|Caenorhabditis elegans Hypothetical
           protein Y39B6A.7 protein.
          Length = 395

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/26 (38%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = +3

Query: 90  GNP-KWXEDAAERSGKSFLFCLSVRV 164
           G+P KW +D+  RS K+F + +S ++
Sbjct: 155 GSPAKWLDDSCYRSSKAFPYLVSQKI 180


>AF003135-11|AAK18987.2| 1406|Caenorhabditis elegans Hypothetical
           protein W03F11.4 protein.
          Length = 1406

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 14/48 (29%), Positives = 20/48 (41%)
 Frame = +3

Query: 9   NPVPIPEPGSGTVSIIVPSSLKTSVRRGNPKWXEDAAERSGKSFLFCL 152
           NP P P+P S   S+    S   +     P   E + E S  S L+ +
Sbjct: 832 NPPPAPQPPSSAASLTPAPSAAQNAPSIAPSTTEASEEESSGSMLWII 879


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,554,297
Number of Sequences: 27780
Number of extensions: 144242
Number of successful extensions: 494
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 333802358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)