Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1117
         (309 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   1.9  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   2.6  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   4.5  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   4.5  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        20   7.8  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    20   7.8  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    20   7.8  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 1.9
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = -3

Query: 199 SEPYLPSIGFHGTRTLRQKRKLFPDLSA 116
           SE   P+   HG R  RQ+ +   D  +
Sbjct: 472 SENNYPTTSIHGDRLQRQREEALADFKS 499


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 7/26 (26%), Positives = 14/26 (53%)
 Frame = -3

Query: 301 WVRTGATSPRTSLT*ISRSAESIRTP 224
           W+  G T    +   +S+  +++RTP
Sbjct: 516 WIERGTTKSMEAANIMSKLPKTVRTP 541


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 20.6 bits (41), Expect = 4.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 78  SFLKTRERLLKRFRCRVPE 22
           S LKT ++L  +  C VPE
Sbjct: 107 SLLKTADQLKIKGLCEVPE 125


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 20.6 bits (41), Expect = 4.5
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +1

Query: 112 TPPRGPGRV 138
           +PPRGPG V
Sbjct: 397 SPPRGPGGV 405


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 19.8 bits (39), Expect = 7.8
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +3

Query: 81  VRRGNPKWXEDAAERSGK 134
           VRR +P W +   E+  K
Sbjct: 169 VRREHPFWDDQRVEQEAK 186


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 19.8 bits (39), Expect = 7.8
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = -3

Query: 178 IGFHGTRTLRQKRKLFPDLSAASSXHFG 95
           +GFHG R  R    ++   S+     FG
Sbjct: 257 MGFHGMRGKRDAAGIYGSNSSTVGTIFG 284


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 19.8 bits (39), Expect = 7.8
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = -3

Query: 178 IGFHGTRTLRQKRKLFPDLSAASSXHFG 95
           +GFHG R  R    ++   S+     FG
Sbjct: 257 MGFHGMRGKRDAAGIYGSNSSTVGTIFG 284


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,603
Number of Sequences: 438
Number of extensions: 1963
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6471036
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)