Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1117
         (309 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g72520.1 68414.m08386 lipoxygenase, putative similar to lipox...    28   1.1  
At5g56500.1 68418.m07051 chaperonin, putative similar to SWISS-P...    28   1.5  
At5g22390.1 68418.m02612 expressed protein                             27   1.9  
At3g44430.1 68416.m04774 expressed protein                             27   3.4  
At3g02270.1 68416.m00208 eIF4-gamma/eIF5/eIF2-epsilon domain-con...    27   3.4  
At2g05210.1 68415.m00549 expressed protein                             27   3.4  
At3g19190.1 68416.m02436 expressed protein                             26   4.5  
At3g04340.1 68416.m00459 FtsH protease family protein similar to...    26   4.5  
At4g39970.1 68417.m05661 haloacid dehalogenase-like hydrolase fa...    26   5.9  
At1g67560.1 68414.m07697 lipoxygenase family protein similar to ...    26   5.9  
At3g13320.1 68416.m01677 calcium exchanger (CAX2) almost identic...    25   7.8  

>At1g72520.1 68414.m08386 lipoxygenase, putative similar to
           lipoxygenase gi:1495804 [Solanum tuberosum], gi:1654140
           [Lycopersicon esculentum], GB:CAB56692 [Arabidopsis
           thaliana]
          Length = 926

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -3

Query: 241 ESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQK 143
           +S +  P  R    ++PYLPS    G RTLR+K
Sbjct: 215 QSQKDHPSKRILFTNQPYLPSETPSGLRTLREK 247


>At5g56500.1 68418.m07051 chaperonin, putative similar to
           SWISS-PROT:P08927- RuBisCO subunit binding-protein beta
           subunit, chloroplast precursor (60 kDa chaperonin beta
           subunit, CPN-60 beta) [Pisum sativum]; contains
           Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
          Length = 597

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = -3

Query: 247 SAESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQKRKLFPDLSAASSXHF 98
           S  S   PP  R SS     + S  F  T+++ Q++  FP + AA   HF
Sbjct: 10  SMGSSLAPPSNRLSSFVS--ISSSSFGRTQSIAQRKARFPKIYAAKQLHF 57


>At5g22390.1 68418.m02612 expressed protein
          Length = 202

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +3

Query: 120 ERSGKSFLFCLSVRVPWNPIEG 185
           + S KSFL  LS   PWNP +G
Sbjct: 17  DNSPKSFLDTLSSSSPWNPSKG 38


>At3g44430.1 68416.m04774 expressed protein 
          Length = 206

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -1

Query: 297 YEPARHLHVHPSPEFQGPQRVSGHRRKCG 211
           ++P+R   + PSP F G Q+ S   R+CG
Sbjct: 42  FQPSRI--ISPSPVFNGGQKTSYGGRRCG 68


>At3g02270.1 68416.m00208 eIF4-gamma/eIF5/eIF2-epsilon
           domain-containing protein similar to SP|Q13144
           Translation initiation factor eIF-2B epsilon subunit
           (eIF-2B GDP-GTP exchange factor) {Homo sapiens};
           contains Pfam profile PF02020:
           eIF4-gamma/eIF5/eIF2-epsilon
          Length = 676

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -3

Query: 202 RSEPYLPSIGFHGTRTLRQKRK 137
           R+ PY+P + F G RTL+ +R+
Sbjct: 288 RTFPYVPDMKFSGNRTLKLERQ 309


>At2g05210.1 68415.m00549 expressed protein
          Length = 364

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 18/52 (34%), Positives = 24/52 (46%)
 Frame = -3

Query: 241 ESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQKRKLFPDLSAASSXHFGLPR 86
           +S  T     C+  +E Y   +GF  T TLR+KR     L    S +F  PR
Sbjct: 282 DSTATLEAFLCNKDAE-YFWGLGFQDTETLRKKRNWL--LGIRESSNFVAPR 330


>At3g19190.1 68416.m02436 expressed protein
          Length = 1861

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 21   IPEPGSGTVSIIVPSSLKTSVRRGNPKWXEDAAER 125
            +P+ G  +   + P   +T +RRGN  W +DA+ R
Sbjct: 1361 VPQEGDSSGRELFP---ETDLRRGNSGWYDDASLR 1392


>At3g04340.1 68416.m00459 FtsH protease family protein similar to
           chloroplast FtsH protease [Arabidopsis thaliana]
           GI:1483215; contains Pfam profiles PF01434: Peptidase
           family M41, PF00004: ATPase AAA family
          Length = 960

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +3

Query: 39  GTVSIIVPSSLKTSVRRGNPKWXEDA 116
           G   ++VP +++  +R G  KW E+A
Sbjct: 81  GEKEVVVPKAIQLHLRHGWKKWQEEA 106


>At4g39970.1 68417.m05661 haloacid dehalogenase-like hydrolase
           family protein low similarity to SP|P95649 CbbY protein
           {Rhodobacter sphaeroides}
          Length = 316

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = -3

Query: 178 IGFHGTRTLRQKRKLFPDLSAASSXHFGLPRRT---LVFKDEGTIIET 44
           IGF   +TLR K +     S  SS    LP R+   L+F  +G I+E+
Sbjct: 30  IGFPRFQTLRFKSRSVYSKSRVSSPVSALPLRSLEALIFDCDGVILES 77


>At1g67560.1 68414.m07697 lipoxygenase family protein similar to
           13-lipoxygenase GB:CAA65269 [Solanum tuberosum],
           gi:1654140 [Lycopersicon esculentum]
          Length = 917

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -3

Query: 223 PQMRCSSRSEPYLPSIGFHGTRTLRQK 143
           PQ R   RS+P LPS    G + LR+K
Sbjct: 209 PQARIIFRSQPCLPSETPDGIKELREK 235


>At3g13320.1 68416.m01677 calcium exchanger (CAX2) almost identical
           to low affinity calcium antiporter CAX2 (GI:1488267)
           [Arabidopsis thaliana]; Ca2+:Cation Antiporter (CaCA)
           Family member PMID:11500563
          Length = 441

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +3

Query: 48  SIIVPSSLKTSVRRGNPKWXEDAAERSGKSFLFC--LSVRVPWNPI 179
           S++   SL TS  +  PK  +++   S K  +FC  L++ +P+ P+
Sbjct: 41  SLMEQGSLSTSFPQHTPKAPKNSVLNSIKIVIFCNKLNLLLPFGPL 86


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,234,691
Number of Sequences: 28952
Number of extensions: 137537
Number of successful extensions: 399
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 399
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 321405440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)