Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1115
(745 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 32 0.099
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ... 31 0.23
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 28 1.6
SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch... 27 3.7
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar... 27 3.7
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ... 26 4.9
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 25 8.6
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 25 8.6
SPBC32H8.06 |mug93||TPR repeat protein, meiotically spliced|Schi... 25 8.6
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 31.9 bits (69), Expect = 0.099
Identities = 22/84 (26%), Positives = 34/84 (40%)
Frame = +1
Query: 217 AAEPTQPKPMAPNRKHQLLISTRPLTTNPRFRPATEFLLAVTHHMTARPHMEVPPTEVHQ 396
AA P+ P P+ + I + P + P+ P + L A P VPP
Sbjct: 964 AAPPSIPPPLPVSN-----ILSSPTSEPPKDHPPSAPLSKPVSTSPAAPLARVPPVPKLS 1018
Query: 397 VEDPPMEVQQAEDPPMEVQQAEDP 468
+ PP+ + A+ PP+ V P
Sbjct: 1019 SKAPPVPLPSADAPPIPVPSTAPP 1042
Score = 25.4 bits (53), Expect = 8.6
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +1
Query: 358 RPHMEVPPTEVHQVEDPPMEVQQAEDPPMEVQQAEDPPM 474
+P + VPP PP+ A PP+ V A+ PP+
Sbjct: 1202 KPSVGVPPVPPPSTA-PPVPTPSAGLPPVPVPTAKAPPV 1239
>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 803
Score = 30.7 bits (66), Expect = 0.23
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -3
Query: 191 FLHVGYVPQLLVWPNVHGSSASTQTSLLRHP 99
F GY+P ++ WPN SA+T + + R+P
Sbjct: 117 FQQQGYIP-VITWPNTDSPSATTSSPISRNP 146
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.9 bits (59), Expect = 1.6
Identities = 12/30 (40%), Positives = 13/30 (43%)
Frame = +1
Query: 391 HQVEDPPMEVQQAEDPPMEVQQAEDPPMEV 480
H V PP+ Q A P M PPM V
Sbjct: 1685 HPVSTPPVRPQSAAPPQMSAPTPPPPPMSV 1714
>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 632
Score = 26.6 bits (56), Expect = 3.7
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = -1
Query: 118 LRC*GILYLCTYARILSIHRRSILWRKEEQQSSNPYLS 5
+ C + + YA+ L IHR S L+ + + N Y S
Sbjct: 175 IHCLQLFFKWQYAQFLFIHRESFLFEYFHRSNDNMYCS 212
>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
Pop2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 703
Score = 26.6 bits (56), Expect = 3.7
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 208 GSHAAEPTQPKPMAPNRKHQLLISTRPLTTNPRFRP 315
G EP QP ++ +R H L + P T+P + P
Sbjct: 449 GVEIVEPDQPYIVSGSRDHTLRVWKLPKNTDPPYLP 484
>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 296
Score = 26.2 bits (55), Expect = 4.9
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = +1
Query: 361 PHMEVPPTEVHQVEDPPMEVQQAEDPPMEVQQAEDPPME 477
P PP PPM+ QQ PP QQA PP++
Sbjct: 211 PQQNYPPAASSSA--PPMQYQQTAYPP---QQAPYPPVQ 244
>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 25.4 bits (53), Expect = 8.6
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +1
Query: 340 THHMTARPHMEVPPTEVHQVEDPPMEVQQAEDP 438
TH+ R H E+ E+ P EV+Q E P
Sbjct: 318 THYRLIRQHPELEHVWEKLEEEAPREVKQIEQP 350
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 25.4 bits (53), Expect = 8.6
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -2
Query: 108 KASYISARTPVF*VSIGVVYY 46
+A Y R P F SIGV+YY
Sbjct: 609 QAVYRDGRNPTFWCSIGVLYY 629
>SPBC32H8.06 |mug93||TPR repeat protein, meiotically
spliced|Schizosaccharomyces pombe|chr 2|||Manual
Length = 383
Score = 25.4 bits (53), Expect = 8.6
Identities = 6/22 (27%), Positives = 17/22 (77%)
Frame = -1
Query: 103 ILYLCTYARILSIHRRSILWRK 38
+++ CTYA +++ + + ++WR+
Sbjct: 60 VVHDCTYALVINPYDKKVIWRR 81
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,785,555
Number of Sequences: 5004
Number of extensions: 53708
Number of successful extensions: 179
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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