Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1115
(745 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0195 + 23142830-23143714,23144288-23144314,23144657-231448... 36 0.034
10_08_1037 - 22477358-22478752 31 1.3
10_01_0075 - 979335-979954,980136-980405,980949-980989,981563-98... 30 2.2
12_01_0527 - 4177928-4178235,4178849-4181438 29 2.9
11_06_0610 - 25449085-25453284 29 2.9
08_02_0672 - 19904353-19904839,19905646-19905704,19906137-199063... 29 3.9
03_02_0341 - 7643426-7643973,7644340-7644505 29 5.2
07_01_0347 - 2509229-2509487,2509682-2509922,2510292-2510511,251... 28 6.8
03_01_0092 - 731069-731434,731569-733080 28 6.8
12_02_0370 + 18139557-18140469,18140561-18140704,18140804-181409... 28 9.0
08_01_0404 - 3590296-3590409,3590529-3590819,3592414-3592461,359... 28 9.0
06_03_1311 - 29241884-29242054,29242802-29242879,29242968-292430... 28 9.0
06_02_0119 + 12040476-12041273,12042767-12042834,12042931-12042979 28 9.0
06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,805... 28 9.0
03_02_0622 + 9927535-9927587,9927954-9928119 28 9.0
01_03_0008 + 11594061-11594078,11594201-11594285,11594506-11595149 28 9.0
>05_05_0195 + 23142830-23143714,23144288-23144314,23144657-23144866,
23144976-23145242,23146290-23146376,23146495-23146553,
23147166-23147768,23148063-23148192,23148570-23149100,
23149636-23149743,23149911-23150456,23150957-23151079,
23151494-23151709
Length = 1263
Score = 35.9 bits (79), Expect = 0.034
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = +1
Query: 376 PPTEVHQVEDPPMEVQQAEDPPMEVQQAEDPPMEV 480
PP E Q+ PP E Q PP E Q ED EV
Sbjct: 1217 PPAETSQLATPPAETSQLATPPAETSQLEDGRTEV 1251
Score = 33.1 bits (72), Expect = 0.24
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +1
Query: 367 MEVPPTEVHQVEDPPMEVQQAEDPPMEVQQAED 465
+ PP E Q+ PP E Q ED EVQ +D
Sbjct: 1224 LATPPAETSQLATPPAETSQLEDGRTEVQNLDD 1256
Score = 31.9 bits (69), Expect = 0.55
Identities = 16/38 (42%), Positives = 17/38 (44%)
Frame = +1
Query: 370 EVPPTEVHQVEDPPMEVQQAEDPPMEVQQAEDPPMEVA 483
EVPP E PP E Q PP E Q PP E +
Sbjct: 1208 EVPPVEATA---PPAETSQLATPPAETSQLATPPAETS 1242
>10_08_1037 - 22477358-22478752
Length = 464
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +1
Query: 361 PHMEVPPTEVHQVEDPP-MEVQQAEDPPMEVQQAEDPPM 474
PH +PP HQ PP M +Q+ PP+ A PP+
Sbjct: 251 PHRPLPPQ--HQQPKPPSMRLQKIRPPPISTPVARPPPV 287
>10_01_0075 -
979335-979954,980136-980405,980949-980989,981563-981663
Length = 343
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 6/58 (10%)
Frame = +1
Query: 313 PATEFLLAVTHHMTARPHMEVPPTEVHQVED---PPM---EVQQAEDPPMEVQQAEDP 468
PAT L + H +P ++ PP+ H E+ PP+ V PP + QQ P
Sbjct: 144 PATHTLRMLQHQPEPQPQLQHPPSPPHPKEECISPPLMEENVPVKPPPPKKRQQGRQP 201
>12_01_0527 - 4177928-4178235,4178849-4181438
Length = 965
Score = 29.5 bits (63), Expect = 2.9
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = -3
Query: 557 RNCYCRRRGYALLTIHRILIASIWIATSIGGSSA 456
R CYCR G+ LL + +L +++ +S+ ++A
Sbjct: 5 RPCYCRNNGFLLLLVQVLLFLFLFLDSSMVATAA 38
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 29.5 bits (63), Expect = 2.9
Identities = 17/58 (29%), Positives = 22/58 (37%), Gaps = 1/58 (1%)
Frame = +1
Query: 301 PRFRPATEFLLAVTHHMTARPHMEVPPTEVHQVEDPPMEVQQAEDPPMEVQQA-EDPP 471
P+ P TE+ T + P + PPT PP+ PP A E PP
Sbjct: 531 PQAEPPTEYSPPATPESSPPPEGKSPPTPTASHSPPPVPEGHTPSPPKSGPPAGESPP 588
>08_02_0672 -
19904353-19904839,19905646-19905704,19906137-19906352,
19906845-19907422,19907506-19908180,19908263-19908653,
19909469-19909621,19909727-19909980,19911023-19911479
Length = 1089
Score = 29.1 bits (62), Expect = 3.9
Identities = 21/81 (25%), Positives = 31/81 (38%)
Frame = +1
Query: 229 TQPKPMAPNRKHQLLISTRPLTTNPRFRPATEFLLAVTHHMTARPHMEVPPTEVHQVEDP 408
T P P+ PN + P++T P P + A P PP + QV+ P
Sbjct: 41 TTPTPLTPNPNPSPTLPPPPMSTPPVVAPPMHSFAPSFRPLGAPP--PPPPPQQVQVQVP 98
Query: 409 PMEVQQAEDPPMEVQQAEDPP 471
P + +P + Q PP
Sbjct: 99 P-QYGGVPNPGYPMAQQMQPP 118
>03_02_0341 - 7643426-7643973,7644340-7644505
Length = 237
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = +1
Query: 343 HHMTARPHMEVPPTEVHQVEDPPMEVQQAEDPPMEVQQAEDPPMEVAIH 489
HH+ P + VPP H PP+ +PP+ V + P+ V H
Sbjct: 165 HHIVLHPPVIVPPKHDHDHSLPPV-----HEPPVTVPDHKPAPVTVPDH 208
>07_01_0347 -
2509229-2509487,2509682-2509922,2510292-2510511,
2510943-2511278,2512047-2512103,2512187-2512210
Length = 378
Score = 28.3 bits (60), Expect = 6.8
Identities = 12/54 (22%), Positives = 26/54 (48%)
Frame = +1
Query: 340 THHMTARPHMEVPPTEVHQVEDPPMEVQQAEDPPMEVQQAEDPPMEVAIHMEAI 501
+ HM M V +V P+E+ A++PP+ + + ++P + +E +
Sbjct: 53 SRHMNKIFSMSVQQASKSKVAVKPLELDNAKEPPLNLYKPKEPYTATIVSVERL 106
>03_01_0092 - 731069-731434,731569-733080
Length = 625
Score = 28.3 bits (60), Expect = 6.8
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = +1
Query: 376 PPTEVHQVEDPPMEVQQAEDPPMEVQQAEDPP 471
PP HQ PP++VQ PM Q PP
Sbjct: 251 PPQHHHQQTPPPIQVQPHHIMPMTPQPQLQPP 282
>12_02_0370 +
18139557-18140469,18140561-18140704,18140804-18140956,
18141032-18141147,18141231-18141398,18142110-18142334,
18142458-18142577
Length = 612
Score = 27.9 bits (59), Expect = 9.0
Identities = 19/87 (21%), Positives = 35/87 (40%), Gaps = 1/87 (1%)
Frame = +1
Query: 214 HAAEPTQPKPMAPNRKHQLLISTRPLTTNPR-FRPATEFLLAVTHHMTARPHMEVPPTEV 390
HAA + +P +R +++ + P + P + A + ++ +P E P
Sbjct: 25 HAAPSSPSQPTTTSRSIPVVLPSAPSSKPPPPTQTAPPVPVVISEPPPPQPQPEPQPAAP 84
Query: 391 HQVEDPPMEVQQAEDPPMEVQQAEDPP 471
Q PP + Q + PP + PP
Sbjct: 85 SQ--PPPPQEQPSPPPPASSNTTQQPP 109
>08_01_0404 -
3590296-3590409,3590529-3590819,3592414-3592461,
3592559-3592795,3593668-3593704,3594311-3594627
Length = 347
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -3
Query: 596 HREANFRHTTNFLRNCYCRRRGYALLTIHRILI 498
H A+ TT F NC CR R +L + +L+
Sbjct: 290 HHRASTGTTTTFTTNCCCRIRLQGMLQVPNLLL 322
>06_03_1311 -
29241884-29242054,29242802-29242879,29242968-29243049,
29243141-29243212,29243316-29243437,29243541-29243596,
29244264-29244333,29244435-29244518,29244599-29244667,
29244855-29244928,29245014-29245125,29245220-29245510
Length = 426
Score = 27.9 bits (59), Expect = 9.0
Identities = 22/68 (32%), Positives = 26/68 (38%)
Frame = +1
Query: 202 VEGSHAAEPTQPKPMAPNRKHQLLISTRPLTTNPRFRPATEFLLAVTHHMTARPHMEVPP 381
V G A P +P AP Q I LT PR + L A T P V P
Sbjct: 72 VAGRFPAPPPLVRPKAPEGTPQ--IRPLDLTKRPRRNRRSPALRAAFQETTISPANLVLP 129
Query: 382 TEVHQVED 405
+H+ ED
Sbjct: 130 LFIHEGED 137
>06_02_0119 + 12040476-12041273,12042767-12042834,12042931-12042979
Length = 304
Score = 27.9 bits (59), Expect = 9.0
Identities = 15/48 (31%), Positives = 19/48 (39%)
Frame = +1
Query: 328 LLAVTHHMTARPHMEVPPTEVHQVEDPPMEVQQAEDPPMEVQQAEDPP 471
LL HH A PH PP ++PP + P + Q PP
Sbjct: 44 LLYGQHH--ALPHPPPPPPPPQPAKEPPPPTKPKHPKPKQQQHPPPPP 89
>06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,
8057595-8058314,8058404-8058603,8058988-8059172,
8059287-8059354,8059432-8060246,8060502-8060599,
8060702-8060887,8061358-8061538,8061651-8061812,
8061894-8061937,8062059-8062115,8062409-8062505,
8062614-8062786,8062868-8063081,8063270-8063395,
8064072-8064188,8064459-8064566,8064729-8064898,
8065049-8065127,8065211-8065285,8065845-8065942,
8066030-8066137,8066238-8066295,8066527-8066631,
8067461-8069516,8069804-8070697,8070896-8071852,
8072022-8072075,8072157-8072222,8072294-8073472,
8073868-8075598,8075764-8075829,8076763-8077788,
8077893-8078041
Length = 4264
Score = 27.9 bits (59), Expect = 9.0
Identities = 16/69 (23%), Positives = 28/69 (40%)
Frame = +1
Query: 178 PTCKKKSLVEGSHAAEPTQPKPMAPNRKHQLLISTRPLTTNPRFRPATEFLLAVTHHMTA 357
P S + + ++P+ P + N + T+ PA E + +V H A
Sbjct: 1973 PNIISPSYEKSGYDSQPSTPIAVPINEAALPSGFSEAHATHSELHPARESISSVGHEKLA 2032
Query: 358 RPHMEVPPT 384
H+E PP+
Sbjct: 2033 GAHLEAPPS 2041
>03_02_0622 + 9927535-9927587,9927954-9928119
Length = 72
Score = 27.9 bits (59), Expect = 9.0
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +1
Query: 142 CTFGHTSNCGTYPTCKK--KSLVEGSHAAEPTQPKPMAPNRKH 264
C+ G + CG+ TC K L E S +A+ T +AP + H
Sbjct: 3 CSCGSSCGCGSNCTCGKMYPDLEEKSSSAQATVVLGVAPEKAH 45
>01_03_0008 + 11594061-11594078,11594201-11594285,11594506-11595149
Length = 248
Score = 27.9 bits (59), Expect = 9.0
Identities = 18/41 (43%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Frame = +1
Query: 376 PPTEVHQVEDPPMEVQQAEDPPMEVQQAEDPPMEVA--IHM 492
PP E E P E A PP E QA PP A IHM
Sbjct: 99 PPEEAPAAEPAPSEA--APPPPAEADQAAAPPATDATVIHM 137
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,954,217
Number of Sequences: 37544
Number of extensions: 441816
Number of successful extensions: 1830
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1802
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -