Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1115
         (745 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee homeobox-...    22   7.0  
M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee homeobox-...    21   9.2  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   9.2  

>M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E60. ).
          Length = 109

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +1

Query: 646 GGSNPYALALVDQAARAHSTTYL 714
           G  NP AL L+ Q    HST  L
Sbjct: 80  GQKNPLALQLMAQGLYNHSTVPL 102


>M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E30. ).
          Length = 109

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +1

Query: 646 GGSNPYALALVDQAARAHST 705
           G  NP AL L+ Q    HST
Sbjct: 80  GQKNPLALQLMAQGLYNHST 99


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +2

Query: 671 HWWIRRQEPTRQHI*YID 724
           H W+RR    +QH+ + D
Sbjct: 181 HGWMRRNVLNKQHVHFHD 198


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,679
Number of Sequences: 438
Number of extensions: 3752
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)