Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1115
(745 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g41580.1 68418.m05052 zinc finger (MIZ type) family protein c... 33 0.15
At2g10940.2 68415.m01168 protease inhibitor/seed storage/lipid t... 33 0.26
At2g10940.1 68415.m01167 protease inhibitor/seed storage/lipid t... 33 0.26
At1g14650.1 68414.m01741 SWAP (Suppressor-of-White-APricot)/surp... 31 0.81
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex... 31 1.1
At3g22120.1 68416.m02792 protease inhibitor/seed storage/lipid t... 31 1.1
At1g48500.1 68414.m05421 expressed protein ; expression supporte... 31 1.1
At3g54320.2 68416.m06004 ovule development protein, putative sim... 30 1.4
At3g54320.1 68416.m06003 ovule development protein, putative sim... 30 1.4
At2g28370.1 68415.m03448 expressed protein contains Pfam PF04535... 30 1.4
At1g14640.1 68414.m01740 SWAP (Suppressor-of-White-APricot)/surp... 30 1.4
At1g12040.1 68414.m01390 leucine-rich repeat family protein / ex... 30 1.4
At1g76890.2 68414.m08948 trihelix DNA-binding protein / GT-2 fac... 30 1.9
At1g76890.1 68414.m08947 trihelix DNA-binding protein / GT-2 fac... 30 1.9
At1g76360.1 68414.m08872 protein kinase, putative similar to pro... 30 1.9
At5g62810.1 68418.m07884 peroxisomal protein (PEX14) identical t... 29 2.5
At4g19040.1 68417.m02805 pleckstrin homology (PH) domain-contain... 29 3.3
At4g00890.1 68417.m00120 proline-rich family protein contains pr... 29 3.3
At3g53330.1 68416.m05884 plastocyanin-like domain-containing pro... 28 5.7
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p... 28 5.7
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex... 28 7.5
At1g71350.1 68414.m08235 eukaryotic translation initiation facto... 28 7.5
At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identic... 27 9.9
At1g56530.1 68414.m06501 hydroxyproline-rich glycoprotein family... 27 9.9
At1g26240.1 68414.m03201 proline-rich extensin-like family prote... 27 9.9
>At5g41580.1 68418.m05052 zinc finger (MIZ type) family protein
contains Pfam domain PF02891: MIZ zinc finger
Length = 703
Score = 33.5 bits (73), Expect = 0.15
Identities = 21/92 (22%), Positives = 35/92 (38%)
Frame = +1
Query: 226 PTQPKPMAPNRKHQLLISTRPLTTNPRFRPATEFLLAVTHHMTARPHMEVPPTEVHQVED 405
P+ P + +R L+ + +RP L H TA HM + P++ Q
Sbjct: 590 PSGPTVQSVSRLSDLVDVDLTVPDTSNWRPRMRGSLVPGSHSTALDHMIIRPSQQSQTST 649
Query: 406 PPMEVQQAEDPPMEVQQAEDPPMEVAIHMEAI 501
Q + P ++ QA+ P A E +
Sbjct: 650 RLNSSQPVQTPSVQTSQAQSPFTTAAYRTETV 681
>At2g10940.2 68415.m01168 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to
proline-rich cell wall protein [Medicago sativa]
GI:3818416; contains Pfam profile PF00234 Protease
inhibitor/seed storage/LTP family
Length = 291
Score = 32.7 bits (71), Expect = 0.26
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +1
Query: 346 HMTARPHMEVPPTEVHQVEDPPMEVQQAEDPPMEVQQAEDPPMEV 480
H P + VPP V ++ PP+ V + PP+ V + PP+ +
Sbjct: 39 HSPKAPKLPVPPVTVPKLPVPPVTVPKLPVPPVTVPKLPVPPVTI 83
Score = 31.5 bits (68), Expect = 0.61
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 361 PHMEVPPTEVHQVEDPPMEVQQAEDPPMEVQQAEDPPMEV 480
P + VPP V ++ PP+ V + PP+ V + PP+ V
Sbjct: 84 PKLPVPPVTVPKLPVPPVTVPKLPVPPVTVPKLPVPPVTV 123
Score = 31.5 bits (68), Expect = 0.61
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 361 PHMEVPPTEVHQVEDPPMEVQQAEDPPMEVQQAEDPPMEV 480
P + VPP V ++ PP+ V + PP+ V + PP+ V
Sbjct: 94 PKLPVPPVTVPKLPVPPVTVPKLPVPPVTVPKLPVPPVTV 133
Score = 31.5 bits (68), Expect = 0.61
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 361 PHMEVPPTEVHQVEDPPMEVQQAEDPPMEVQQAEDPPMEV 480
P + VPP V ++ PP+ V + PP+ V + PP+ V
Sbjct: 104 PKLPVPPVTVPKLPVPPVTVPKLPVPPVTVPKLPVPPVTV 143
Score = 31.1 bits (67), Expect = 0.81
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +1
Query: 361 PHMEVPPTEVHQVEDPPMEVQQAEDPPMEVQQAEDPPMEV 480
P + VPP V ++ PP+ V + PP+ + + PP+ V
Sbjct: 54 PKLPVPPVTVPKLPVPPVTVPKLPVPPVTIPKLPVPPVTV 93
Score = 31.1 bits (67), Expect = 0.81
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +1
Query: 361 PHMEVPPTEVHQVEDPPMEVQQAEDPPMEVQQAEDPPMEV 480
P + VPP V ++ PP+ + + PP+ V + PP+ V
Sbjct: 64 PKLPVPPVTVPKLPVPPVTIPKLPVPPVTVPKLPVPPVTV 103
Score = 31.1 bits (67), Expect = 0.81
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +1
Query: 361 PHMEVPPTEVHQVEDPPMEVQQAEDPPMEVQQAEDPPMEV 480
P + VPP + ++ PP+ V + PP+ V + PP+ V
Sbjct: 74 PKLPVPPVTIPKLPVPPVTVPKLPVPPVTVPKLPVPPVTV 113
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 361 PHMEVPPTEVHQVEDPPMEVQQAEDPPMEVQQAEDPPM 474
P + VPP V ++ PP+ V + PP+ V + PP+
Sbjct: 114 PKLPVPPVTVPKLPVPPVTVPKLPVPPVTVPKLPLPPI 151
>At2g10940.1 68415.m01167 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to
proline-rich cell wall protein [Medicago sativa]
GI:3818416; contains Pfam profile PF00234 Protease
inhibitor/seed storage/LTP family
Length = 291
Score = 32.7 bits (71), Expect = 0.26
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +1
Query: 346 HMTARPHMEVPPTEVHQVEDPPMEVQQAEDPPMEVQQAEDPPMEV 480
H P + VPP V ++ PP+ V + PP+ V + PP+ +
Sbjct: 39 HSPKAPKLPVPPVTVPKLPVPPVTVPKLPVPPVTVPKLPVPPVTI 83
Score = 31.5 bits (68), Expect = 0.61
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 361 PHMEVPPTEVHQVEDPPMEVQQAEDPPMEVQQAEDPPMEV 480
P + VPP V ++ PP+ V + PP+ V + PP+ V
Sbjct: 84 PKLPVPPVTVPKLPVPPVTVPKLPVPPVTVPKLPVPPVTV 123
Score = 31.5 bits (68), Expect = 0.61
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 361 PHMEVPPTEVHQVEDPPMEVQQAEDPPMEVQQAEDPPMEV 480
P + VPP V ++ PP+ V + PP+ V + PP+ V
Sbjct: 94 PKLPVPPVTVPKLPVPPVTVPKLPVPPVTVPKLPVPPVTV 133
Score = 31.5 bits (68), Expect = 0.61
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 361 PHMEVPPTEVHQVEDPPMEVQQAEDPPMEVQQAEDPPMEV 480
P + VPP V ++ PP+ V + PP+ V + PP+ V
Sbjct: 104 PKLPVPPVTVPKLPVPPVTVPKLPVPPVTVPKLPVPPVTV 143
Score = 31.1 bits (67), Expect = 0.81
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +1
Query: 361 PHMEVPPTEVHQVEDPPMEVQQAEDPPMEVQQAEDPPMEV 480
P + VPP V ++ PP+ V + PP+ + + PP+ V
Sbjct: 54 PKLPVPPVTVPKLPVPPVTVPKLPVPPVTIPKLPVPPVTV 93
Score = 31.1 bits (67), Expect = 0.81
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +1
Query: 361 PHMEVPPTEVHQVEDPPMEVQQAEDPPMEVQQAEDPPMEV 480
P + VPP V ++ PP+ + + PP+ V + PP+ V
Sbjct: 64 PKLPVPPVTVPKLPVPPVTIPKLPVPPVTVPKLPVPPVTV 103
Score = 31.1 bits (67), Expect = 0.81
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +1
Query: 361 PHMEVPPTEVHQVEDPPMEVQQAEDPPMEVQQAEDPPMEV 480
P + VPP + ++ PP+ V + PP+ V + PP+ V
Sbjct: 74 PKLPVPPVTIPKLPVPPVTVPKLPVPPVTVPKLPVPPVTV 113
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 361 PHMEVPPTEVHQVEDPPMEVQQAEDPPMEVQQAEDPPM 474
P + VPP V ++ PP+ V + PP+ V + PP+
Sbjct: 114 PKLPVPPVTVPKLPVPPVTVPKLPVPPVTVPKLPLPPI 151
>At1g14650.1 68414.m01741 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein / ubiquitin family protein
similar to SP|Q15459 Splicing factor 3 subunit 1
(Spliceosome associated protein 114) {Homo sapiens};
contains Pfam profiles PF00240: Ubiquitin family,
PF01805: Surp module
Length = 785
Score = 31.1 bits (67), Expect = 0.81
Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Frame = +1
Query: 262 HQLLISTRPLTTNPRFRPATEFLLAVTHHMTA-RPHMEVPPTEVHQVEDPPMEVQQAEDP 438
H ++ RP P HHM RP+ ++PP+ + ++ PPM P
Sbjct: 606 HPQMMMNRPPQMQPGMHVPPPPGSQFAHHMQIPRPYGQLPPSAMGMMQPPPMPGMAPPPP 665
Query: 439 PME 447
P E
Sbjct: 666 PEE 668
>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 760
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/32 (40%), Positives = 14/32 (43%)
Frame = +1
Query: 376 PPTEVHQVEDPPMEVQQAEDPPMEVQQAEDPP 471
PP VH PP EV PP V + PP
Sbjct: 663 PPPPVHYSSPPPPEVHYHSPPPSPVHYSSPPP 694
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
Frame = +1
Query: 337 VTHHMTARP--HMEVPPTEVHQVEDPPMEVQQAEDPP-MEVQQAEDPP 471
V HH P H PP +HQ PP + PP + V A PP
Sbjct: 709 VVHHSPPPPMVHHSPPPPVIHQSPPPPSPEYEGPLPPVIGVSYASPPP 756
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Frame = +1
Query: 376 PPTEVHQVEDPPMEVQQAEDPPMEVQQAED-PPMEVAIH 489
PP EVH PP V + PP E+ PP +H
Sbjct: 673 PPPEVHYHSPPPSPVHYSSPPPPPSAPCEESPPPAPVVH 711
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = +1
Query: 376 PPTEVHQVEDPPMEVQQAEDPPMEVQQAEDPP 471
PP VH PP V + PP V + PP
Sbjct: 632 PPPVVHYSSPPPPPVYYSSPPPPPVYYSSPPP 663
>At3g22120.1 68416.m02792 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to
SP|Q00451|PRF1_LYCES 36.4 kDa proline-rich protein
Lycopersicon esculentum, proline-rich cell wall protein
[Medicago sativa] GI:3818416; contains Pfam profile
PF00234 Protease inhibitor/seed storage/LTP family
Length = 334
Score = 30.7 bits (66), Expect = 1.1
Identities = 25/86 (29%), Positives = 28/86 (32%)
Frame = +1
Query: 214 HAAEPTQPKPMAPNRKHQLLISTRPLTTNPRFRPATEFLLAVTHHMTARPHMEVPPTEVH 393
H PT P P ++ T P T P P T VT T P + PPT
Sbjct: 156 HKPPPTPCPPPTPTPTPPVV--TPPTPTPPVITPPTPTPPVVTPP-TPTPPVITPPTPTP 212
Query: 394 QVEDPPMEVQQAEDPPMEVQQAEDPP 471
V PP PP PP
Sbjct: 213 PVITPPTPTPPVVTPPTPTPPVVTPP 238
Score = 30.3 bits (65), Expect = 1.4
Identities = 24/85 (28%), Positives = 33/85 (38%)
Frame = +1
Query: 217 AAEPTQPKPMAPNRKHQLLISTRPLTTNPRFRPATEFLLAVTHHMTARPHMEVPPTEVHQ 396
A +P PKP P K +P T P +P T + T +P PPT+ H
Sbjct: 59 AVKPPTPKP--PTVKPH----PKPPTVKPHPKPPT--VKPHPKPPTVKPPHPKPPTKPHP 110
Query: 397 VEDPPMEVQQAEDPPMEVQQAEDPP 471
PP+ + PP + PP
Sbjct: 111 HPKPPIVKPPTKPPPSTPKPPTKPP 135
Score = 28.3 bits (60), Expect = 5.7
Identities = 24/86 (27%), Positives = 27/86 (31%), Gaps = 5/86 (5%)
Frame = +1
Query: 229 TQPKPMAPNRKHQLLIST-----RPLTTNPRFRPATEFLLAVTHHMTARPHMEVPPTEVH 393
T+P P P H T P T P P T +T T P + PPT
Sbjct: 144 TKPPPSTPKPPHHKPPPTPCPPPTPTPTPPVVTPPTPTPPVITPP-TPTPPVVTPPTPTP 202
Query: 394 QVEDPPMEVQQAEDPPMEVQQAEDPP 471
V PP PP PP
Sbjct: 203 PVITPPTPTPPVITPPTPTPPVVTPP 228
>At1g48500.1 68414.m05421 expressed protein ; expression supported
by MPSS
Length = 285
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = +1
Query: 208 GSHAAEPTQPKPMAPNRKHQLLISTRPLTTNPRFRPATEFLLAVTHHMTARPHMEVPPTE 387
G HA +QPKP H L +T P T P F P+ ++++ T + + PT+
Sbjct: 152 GPHAKPVSQPKPQ--KLVHHSLPTTDPPTMPPSFLPSISYIVSETRSSGSNGVTGLGPTK 209
>At3g54320.2 68416.m06004 ovule development protein, putative
similar to ovule development protein aintegumenta
(GI:1209099) [Arabidopsis thaliana]
Length = 356
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = +1
Query: 328 LLAVTHHMTARPHMEVPPTEVHQ--VEDPPMEVQQAEDPPMEVQQAE 462
L+ + R E P EV Q VE+PP E ++ E+ E Q+AE
Sbjct: 179 LVEAKQEVETREAKEEPREEVKQQYVEEPPQEEEEKEEEKAEQQEAE 225
>At3g54320.1 68416.m06003 ovule development protein, putative
similar to ovule development protein aintegumenta
(GI:1209099) [Arabidopsis thaliana]
Length = 427
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = +1
Query: 328 LLAVTHHMTARPHMEVPPTEVHQ--VEDPPMEVQQAEDPPMEVQQAE 462
L+ + R E P EV Q VE+PP E ++ E+ E Q+AE
Sbjct: 250 LVEAKQEVETREAKEEPREEVKQQYVEEPPQEEEEKEEEKAEQQEAE 296
>At2g28370.1 68415.m03448 expressed protein contains Pfam PF04535 :
Domain of unknown function (DUF588); similar to
putative ethylene responsive element binding protein
(GI:22135858) [Arabidopsis thaliana]
Length = 179
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +1
Query: 367 MEVPPTEVHQVEDPPMEVQQAEDPP 441
M V VH VEDPP + E+PP
Sbjct: 1 MNVSHASVHPVEDPPAAATEVENPP 25
>At1g14640.1 68414.m01740 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein similar to human splicing
factor GB:CAA59494 GI:899298 from [Homo sapiens];
contains Pfam profile PF01805: Surp module
Length = 735
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/62 (24%), Positives = 26/62 (41%)
Frame = +1
Query: 262 HQLLISTRPLTTNPRFRPATEFLLAVTHHMTARPHMEVPPTEVHQVEDPPMEVQQAEDPP 441
H ++ +RP P R +H +P+ ++PP + ++ PPM PP
Sbjct: 594 HPSMMMSRPPQMQPVMRVPPPPGSQFSHMQVPQPYGQLPPLSMGMMQPPPMAEMPPPPPP 653
Query: 442 ME 447
E
Sbjct: 654 GE 655
>At1g12040.1 68414.m01390 leucine-rich repeat family protein /
extensin family protein (LRX1) similar to extensin-like
protein [Lycopersicon esculentum]
gi|5917664|gb|AAD55979; contains leucine-rich repeats,
Pfam:PF00560; contains proline rich extensin domains,
INTERPRO:IPR002965
Length = 744
Score = 30.3 bits (65), Expect = 1.4
Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 1/83 (1%)
Frame = +1
Query: 226 PTQPKPMAPNRKHQLLISTRPLTTNPRFRPA-TEFLLAVTHHMTARPHMEVPPTEVHQVE 402
P P P P+ + ++ P +P + P+ T+ T + + P PPT+ +
Sbjct: 637 PVTPSPPPPSPVYYPPVTPSPPPPSPVYYPSETQSPPPPTEYYYS-PSQSPPPTKACKEG 695
Query: 403 DPPMEVQQAEDPPMEVQQAEDPP 471
PP E PP E + PP
Sbjct: 696 HPPQATPSYEPPP-EYSYSSSPP 717
>At1g76890.2 68414.m08948 trihelix DNA-binding protein / GT-2 factor
(GT2) identical to GT2 factor [Arabidopsis thaliana]
GI:416490, GI:2664202 (DNA binding factor GT-2 from
Arabidopsis)
Length = 575
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +1
Query: 196 SLVEGSHAAEPTQPKPMAPNRKHQLLISTRPLTTNPRF 309
SL+ ++ P+ K +P KH +S +P+TTNP F
Sbjct: 155 SLIPWISSSNPSTEKSSSP-LKHHHQVSVQPITTNPTF 191
>At1g76890.1 68414.m08947 trihelix DNA-binding protein / GT-2 factor
(GT2) identical to GT2 factor [Arabidopsis thaliana]
GI:416490, GI:2664202 (DNA binding factor GT-2 from
Arabidopsis)
Length = 498
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +1
Query: 196 SLVEGSHAAEPTQPKPMAPNRKHQLLISTRPLTTNPRF 309
SL+ ++ P+ K +P KH +S +P+TTNP F
Sbjct: 78 SLIPWISSSNPSTEKSSSP-LKHHHQVSVQPITTNPTF 114
>At1g76360.1 68414.m08872 protein kinase, putative similar to
protein kinase APK1B, SWISS-PROT:P46573; contains
protein kinase domain, Pfam:PF00069
Length = 484
Score = 29.9 bits (64), Expect = 1.9
Identities = 27/87 (31%), Positives = 33/87 (37%)
Frame = +1
Query: 217 AAEPTQPKPMAPNRKHQLLISTRPLTTNPRFRPATEFLLAVTHHMTARPHMEVPPTEVHQ 396
A PT P P H+L RP T PR +P T P E P +
Sbjct: 45 ALHPTFP---LPETGHKL----RPAATPPREKPQHR-----TTRSVENPPREKPQEKTRS 92
Query: 397 VEDPPMEVQQAEDPPMEVQQAEDPPME 477
VE+PP E P + + E PP E
Sbjct: 93 VENPPRE-----KPQEKTRSVETPPQE 114
>At5g62810.1 68418.m07884 peroxisomal protein (PEX14) identical to
PEX14 [Arabidopsis thaliana] GI:11094252; contains Pfam
profile PF04695: Peroxisomal membrane anchor protein
(Pex14p) conserved region; supporting cDNA
gi|11094253|dbj|AB037539.1|
Length = 507
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = +1
Query: 376 PPTEVHQVEDPPMEVQQAEDPPMEVQQ---AEDPPMEVAIHMEAI 501
PP++ + D ++ +A P EVQQ A+DPP V + E I
Sbjct: 9 PPSDFPALADENSQIPEATKPANEVQQATIAQDPPTSVFKNSEPI 53
>At4g19040.1 68417.m02805 pleckstrin homology (PH) domain-containing
protein / lipid-binding START domain-containing protein
contains Pfam profiles PF01852: START domain, PF00169:
PH domain
Length = 718
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +1
Query: 163 NCGTYPTCKKKSLVEGSHAAEPTQPKPMAPNRKHQLLI 276
NCG P C + L G + P +P+ P + Q LI
Sbjct: 319 NCGPQPGCVRAHLESGGYNISPLKPRNGRPRTQVQHLI 356
>At4g00890.1 68417.m00120 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 431
Score = 29.1 bits (62), Expect = 3.3
Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 6/97 (6%)
Frame = +1
Query: 226 PTQPKPMAPNRKHQLLIST--RPLTTNPRFRPATEFLLAVTHHMTARPHMEVPP-TEVHQ 396
P + P + + Q L S RPLTT P+ + L T ++P + E
Sbjct: 97 PPKSPPESTESQQQFLASVPLRPLTTEPKTPLSPSSTLKATEESQSQPSPPLESIVETWF 156
Query: 397 VEDPPMEVQQAEDPPMEV---QQAEDPPMEVAIHMEA 498
PP + ++ + + Q+A+ PP ++ + A
Sbjct: 157 RPSPPTSTETGDETQLPIPPPQEAKTPPSSPSMMLNA 193
>At3g53330.1 68416.m05884 plastocyanin-like domain-containing
protein similar to mavicyanin SP:P80728 from [Cucurbita
pepo]
Length = 310
Score = 28.3 bits (60), Expect = 5.7
Identities = 17/72 (23%), Positives = 31/72 (43%)
Frame = +1
Query: 235 PKPMAPNRKHQLLISTRPLTTNPRFRPATEFLLAVTHHMTARPHMEVPPTEVHQVEDPPM 414
P P P++ H+ +RP+T +P T H +RP+ PP + +P
Sbjct: 121 PSPPPPSKTHE---RSRPITPSPPPPSKT--------HEPSRPNTPPPPPPPSKTHEPSR 169
Query: 415 EVQQAEDPPMEV 450
+ + PP ++
Sbjct: 170 RITPSPPPPSKI 181
>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
protein contains Pfam profile PF01480: PWI domain
Length = 878
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +2
Query: 407 PLWRFNRRRIPLWRFNRRRIPL 472
PL+R NR PL+R NR R PL
Sbjct: 394 PLYRRNRSPSPLYRRNRSRSPL 415
>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 839
Score = 27.9 bits (59), Expect = 7.5
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = +1
Query: 376 PPTEVHQVEDPPMEVQQAEDPPMEVQQAEDPPM 474
PP VH PP + ++ PP + + PP+
Sbjct: 793 PPPAVHYSPPPPPVIHHSQPPPPPIYEGPLPPI 825
>At1g71350.1 68414.m08235 eukaryotic translation initiation factor
SUI1 family protein weak similarity to SP|P41214 Ligatin
(Hepatocellular carcinoma-associated antigen 56) {Homo
sapiens}; contains Pfam profile PF01253: Translation
initiation factor SUI1
Length = 597
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +2
Query: 167 AAHILHARRSPLSKDRMQQNRRNLSQWLQT 256
A H+L R S L+ D + + + LS+WLQ+
Sbjct: 306 ANHVLPCRPSGLTLDIKKSSHKKLSKWLQS 335
>At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identical
to gi_11935088_gb_AAG41964
Length = 209
Score = 27.5 bits (58), Expect = 9.9
Identities = 24/86 (27%), Positives = 29/86 (33%), Gaps = 5/86 (5%)
Frame = +1
Query: 241 PMAPNRKHQLLISTRPLTTNPRFRPATEFLLAVTHHMTARPHMEV--PPTEVHQVEDP-- 408
P AP + TT P P V + P E PPT V + P
Sbjct: 35 PSAPTTSPTKSPAVTSPTTAPAKTPTASASSPVESPKSPAPVSESSPPPTPVPESSPPVP 94
Query: 409 -PMEVQQAEDPPMEVQQAEDPPMEVA 483
PM PP+ A+ PP VA
Sbjct: 95 APMVSSPVSSPPVPAPVADSPPAPVA 120
>At1g56530.1 68414.m06501 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965;
Length = 185
Score = 27.5 bits (58), Expect = 9.9
Identities = 21/91 (23%), Positives = 26/91 (28%)
Frame = +1
Query: 199 LVEGSHAAEPTQPKPMAPNRKHQLLISTRPLTTNPRFRPATEFLLAVTHHMTARPHMEVP 378
L E A P P N +H +T + P T T P E P
Sbjct: 93 LPENRAATAGQPPSPSPDNHRHHRRTTTAAVAGQPPHHRRTTAAAGTTTIAGQPPPPESP 152
Query: 379 PTEVHQVEDPPMEVQQAEDPPMEVQQAEDPP 471
P E P + +PP PP
Sbjct: 153 PPESLPPPSPESPSPPSPEPPPPSSLEPPPP 183
>At1g26240.1 68414.m03201 proline-rich extensin-like family protein
similar to hydroxyproline-rich glycoprotein precursor
gi|727264|gb|AAA87902; contains proline-rich extensin
domains, INTERPRO:IPR002965
Length = 478
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = +1
Query: 376 PPTEVHQVEDPPMEVQQAEDPPMEVQQAEDPP 471
PPT ++ PP V + PP + ++ PP
Sbjct: 42 PPTHIYSSPPPPPYVYSSPPPPPYIYKSPPPP 73
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,082,542
Number of Sequences: 28952
Number of extensions: 311375
Number of successful extensions: 1293
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1041
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1252
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -