Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1113
         (773 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcript...    27   0.85 
AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcript...    25   2.6  
AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcript...    25   2.6  
AJ459779-1|CAD30839.1|  405|Anopheles gambiae clip-domain serine...    25   3.4  

>AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1099

 Score = 26.6 bits (56), Expect = 0.85
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
 Frame = +2

Query: 77  RTLDVRSGRMKL-SSYVRD----FRTPEASRFQSVNEGAL*AQMLGPERW*TM-PGQVEV 238
           RT  V +G  ++  SY +D    + T E    +SV  G     +LGP  W TM  G +++
Sbjct: 588 RTKRVPAGLQRIIHSYFQDRELVYETSEGPVVRSVTAGVPQGSILGPTLWNTMYDGVLDI 647

Query: 239 RGNPDED 259
              PD +
Sbjct: 648 ALPPDAE 654


>AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1201

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
 Frame = -2

Query: 745 GSV*AKRFSAIHFQGWLLRQVSRCTLLSGFRLPWPPSC-CHERPTPFMVSHERFLGALNT 569
           GS   +R      +G +  QV+  T +S +    PPS   HE         ER LGA+  
Sbjct: 125 GSYPIQRVWGSELRGLVAAQVAGITFISVYA---PPSLSAHE--------FERLLGAIEL 173

Query: 568 FGSSHSASSAYQNWPTWH 515
             +SHS      ++  WH
Sbjct: 174 EAASHSRVVVAGDFNAWH 191


>AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1173

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = -2

Query: 631 CHERPTPFMVSHERFLGALNTFGSSHSASSAYQNWPTWH 515
           C+ RP      +E FL A+    S+HS      ++  WH
Sbjct: 110 CYARPRRPEEDYEGFLAAVQLEASTHSQVVIDGDFNAWH 148


>AJ459779-1|CAD30839.1|  405|Anopheles gambiae clip-domain serine
           protease protein.
          Length = 405

 Score = 24.6 bits (51), Expect = 3.4
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -3

Query: 306 PYTQFRRSICTSESLRSSSGFP 241
           P+T F RSIC  E    SS  P
Sbjct: 260 PFTDFLRSICLPEQNFESSATP 281


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 829,437
Number of Sequences: 2352
Number of extensions: 17673
Number of successful extensions: 87
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 80665782
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)