Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1108
         (662 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0370 + 3275771-3275789,3275972-3276976,3277062-3277624           29   2.5  
04_04_0867 + 28865857-28866657,28866778-28867113,28867248-288674...    29   4.4  
08_01_0535 - 4638954-4639127,4639894-4639944,4640287-4640352,464...    28   7.6  
03_06_0576 + 34832900-34832911,34833006-34833122,34833752-348338...    28   7.6  

>08_01_0370 + 3275771-3275789,3275972-3276976,3277062-3277624
          Length = 528

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +2

Query: 350 F*HCACVWLEFYRFVGTCCV*VNMCPLFRTDVRVDGDYA 466
           F +CA   L  YR  G+  +  N+C +F T + V+G YA
Sbjct: 388 FMYCAIPALFLYRTYGSMSIMWNICLMFITGMFVNGPYA 426


>04_04_0867 +
           28865857-28866657,28866778-28867113,28867248-28867451,
           28867567-28867746
          Length = 506

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -2

Query: 463 VIPIYTDISTKQRTHIYLHTTCPYESVKFEPNTRTVLKTNDNSIG 329
           ++  +T++S K RT   L  TC Y       N   +LKTN  + G
Sbjct: 52  LLEYHTELSRKYRTFRMLTPTCNYVYTVEPANVEHILKTNFANYG 96


>08_01_0535 -
           4638954-4639127,4639894-4639944,4640287-4640352,
           4640492-4640557,4640701-4640892,4641282-4641780,
           4642009-4642364
          Length = 467

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -1

Query: 479 YINSERNPHLHGHQYETTDTYLLTHNMSLRIGKIRAKHTH 360
           Y++S RN H   H +   +T  L  N S   G +  +H H
Sbjct: 127 YMSSSRNDHHTNHHHHQINTPSLMSNSSSNNGVMLQEHQH 166


>03_06_0576 +
           34832900-34832911,34833006-34833122,34833752-34833810,
           34833901-34833960,34834197-34834250,34834332-34834380,
           34834493-34834540,34834889-34834954,34835591-34835641,
           34835732-34835851,34835921-34836005,34836428-34836509,
           34836666-34836774,34837005-34837051,34837131-34837188,
           34839114-34839220,34839700-34839765,34839833-34839879,
           34839977-34840042,34840146-34840243,34840344-34840469,
           34840551-34840835,34840920-34840985,34841079-34841228
          Length = 675

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -2

Query: 421 HIYLHTTCPYESVKFEPNTRTVL 353
           H  +H T PY+++ F+P  RT+L
Sbjct: 479 HANVHGTLPYDNLHFDPVLRTLL 501


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,952,629
Number of Sequences: 37544
Number of extensions: 256574
Number of successful extensions: 583
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 583
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)