Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1108
         (662 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.63 
SB_41963| Best HMM Match : Metallothio (HMM E-Value=3.7)               29   2.6  
SB_28255| Best HMM Match : Curto_V2 (HMM E-Value=0.79)                 28   5.9  
SB_10985| Best HMM Match : E-MAP-115 (HMM E-Value=5.5)                 28   5.9  
SB_49058| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.8  

>SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 7645

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = -2

Query: 478  TSILSVIPIYTD--ISTKQRTHIYLHTTCPYESVKFEPNTRTVLKTNDNSI 332
            TS   +IPI  D  I  K+   + LHT  P   V   PNT TV  T+D++I
Sbjct: 3145 TSKTIMIPINNDKDIEPKEDFTVQLHTNDP--RVSLNPNTATVFITDDDAI 3193


>SB_41963| Best HMM Match : Metallothio (HMM E-Value=3.7)
          Length = 167

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
 Frame = +2

Query: 224 CD*LVSAKTLIPRGT*CACV---ENSFFKTSRCAIFYNSNTIVICF*HCACV-WLEFYRF 391
           C  +   K  I  GT CA V   + +    ++CAI + +   ++C+  CA V W +    
Sbjct: 78  CAIVHGTKCAIVHGTQCAIVCWTKCAIVHGTKCAIVHGTKCAIVCWTKCAIVCWTKCAIV 137

Query: 392 VGTCCV*VN 418
            GT C  V+
Sbjct: 138 HGTKCAIVH 146


>SB_28255| Best HMM Match : Curto_V2 (HMM E-Value=0.79)
          Length = 364

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -2

Query: 376 EPNTRTVLKTNDNS-IGIVEDCATRGFKKRILHA 278
           EP   T+ +T DNS I I EDC+T    K I  A
Sbjct: 119 EPERLTIKETRDNSVISIEEDCSTDAEMKVIYDA 152


>SB_10985| Best HMM Match : E-MAP-115 (HMM E-Value=5.5)
          Length = 320

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -2

Query: 376 EPNTRTVLKTNDNS-IGIVEDCATRGFKKRILHA 278
           EP   T+ +T DNS I I EDC+T    K I  A
Sbjct: 33  EPERLTIKETRDNSAISIEEDCSTDAEMKVIYDA 66


>SB_49058| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 320

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
 Frame = +2

Query: 233 LVSAKTLIPRGT*CACVENSFFKTSRCAIFYNSNTIVIC--F*HCACVWLEFYR 388
           L  A  L P  T C+C  +  +K     + Y   T+V+C     C+C     Y+
Sbjct: 201 LQGAVVLCPILTRCSCTTSYTYKVQLYYVLYLQGTVVLCPILTRCSCTMSYTYK 254


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,826,344
Number of Sequences: 59808
Number of extensions: 337546
Number of successful extensions: 863
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)