Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1108
         (662 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g23580.1 68416.m02966 ribonucleoside-diphosphate reductase sm...    29   3.6  

>At3g23580.1 68416.m02966 ribonucleoside-diphosphate reductase small
           chain / ribonucleotide reductase nearly identical to
           SP|P50651 Ribonucleoside-diphosphate reductase small
           chain (EC 1.17.4.1) (Ribonucleotide reductase) (R2
           subunit) {Arabidopsis thaliana}
          Length = 341

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +2

Query: 221 CCD*LVSAKTLIPRGT*CACVENSFFKTSRCAIFY 325
           C D + S  +   R    ACVE  FF  S CAIF+
Sbjct: 159 CLDWIQSPMSFAVRLVAFACVEGIFFSGSFCAIFW 193


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,215,239
Number of Sequences: 28952
Number of extensions: 212466
Number of successful extensions: 440
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 440
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)