Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1107
(748 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g76965.1 68414.m08961 glycine-rich protein 29 2.5
At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to ... 29 4.3
At5g42370.1 68418.m05159 expressed protein 29 4.3
At3g13320.1 68416.m01677 calcium exchanger (CAX2) almost identic... 29 4.3
At5g16980.1 68418.m01989 NADP-dependent oxidoreductase, putative... 28 5.7
At1g72520.1 68414.m08386 lipoxygenase, putative similar to lipox... 28 5.7
At1g12370.2 68414.m01430 type II CPD photolyase PHR1 (PHR1) near... 28 5.7
At1g12370.1 68414.m01429 type II CPD photolyase PHR1 (PHR1) near... 28 5.7
At2g02800.2 68415.m00225 protein kinase (APK2b) identical to pro... 28 7.6
At2g02800.1 68415.m00224 protein kinase (APK2b) identical to pro... 28 7.6
At5g60000.1 68418.m07524 hypothetical protein 27 10.0
At5g22390.1 68418.m02612 expressed protein 27 10.0
>At1g76965.1 68414.m08961 glycine-rich protein
Length = 158
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -3
Query: 458 PGTGRIRFPSKPDTPRSSEPILIPKLRIQFAD 363
PG + FP KP+ P P +P+L + F D
Sbjct: 93 PGAAIVVFPKKPEEPVKVVPTPMPQLNLFFGD 124
>At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to
autophagy 7 [Arabidopsis thaliana] GI:19912147; contains
Pfam profile PF00899: ThiF family
Length = 697
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = -3
Query: 245 PQRVSGHRRKCGALRVPNHISLL*DSMELERSGRKENSSRTSRRR 111
P ++G CG +V NH++LL +S+ L+ ++S +R +
Sbjct: 42 PISITGFYGPCGHPQVSNHLTLLSESLPLDEQSLIASTSHGNRNK 86
>At5g42370.1 68418.m05159 expressed protein
Length = 447
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -1
Query: 184 PFYRIPWNSNAQAEKKTLPGPLGGVFRPL-WVTPSNTR 74
P Y + + Q+ +K +P PL + R L W TPS R
Sbjct: 285 PLYDVTSSGLVQSVEKVVPRPLRSIVRLLFWYTPSTMR 322
>At3g13320.1 68416.m01677 calcium exchanger (CAX2) almost identical
to low affinity calcium antiporter CAX2 (GI:1488267)
[Arabidopsis thaliana]; Ca2+:Cation Antiporter (CaCA)
Family member PMID:11500563
Length = 441
Score = 28.7 bits (61), Expect = 4.3
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Frame = +2
Query: 47 SIIVPSSLKTSVRRGNPKWPEDAAERSGKSFLFC--LSVRVPWNPI 178
S++ SL TS + PK P+++ S K +FC L++ +P+ P+
Sbjct: 41 SLMEQGSLSTSFPQHTPKAPKNSVLNSIKIVIFCNKLNLLLPFGPL 86
>At5g16980.1 68418.m01989 NADP-dependent oxidoreductase, putative
strong similarity to probable NADP-dependent
oxidoreductase (zeta-crystallin homolog) P1
[SP|Q39172][gi:886428] and P2 [SP|Q39173][gi:886430],
Arabidopsis thaliana
Length = 239
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -1
Query: 589 RVRIQSET*DDFRECHIKYIQFLRPH 512
R+RIQ DF + + K+++FL PH
Sbjct: 172 RIRIQGFVVSDFYDEYSKFLEFLHPH 197
>At1g72520.1 68414.m08386 lipoxygenase, putative similar to
lipoxygenase gi:1495804 [Solanum tuberosum], gi:1654140
[Lycopersicon esculentum], GB:CAB56692 [Arabidopsis
thaliana]
Length = 926
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -2
Query: 240 ESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQK 142
+S + P R ++PYLPS G RTLR+K
Sbjct: 215 QSQKDHPSKRILFTNQPYLPSETPSGLRTLREK 247
>At1g12370.2 68414.m01430 type II CPD photolyase PHR1 (PHR1) nearly
identical to type II CPD photolyase PHR1 [Arabidopsis
thaliana] GI:2984707; similar to class II DNA photolyase
(GI:5081541) [Chlamydomonas reinhardtii]; supporting
cDNA gi|2984706|gb|AF053365.1|AF053365
Length = 496
Score = 28.3 bits (60), Expect = 5.7
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = -3
Query: 725 RQSDSLV-RASSELTV-ERRSYRIVPMRTKRNRHDFTARKIRGRPENAGPD 579
R D +V R S L + E ++ +VPM ++ +++AR IRG+ PD
Sbjct: 134 RCKDEVVKRTSDSLAIHEVDAHNVVPMWAASSKLEYSARTIRGKINKLLPD 184
>At1g12370.1 68414.m01429 type II CPD photolyase PHR1 (PHR1) nearly
identical to type II CPD photolyase PHR1 [Arabidopsis
thaliana] GI:2984707; similar to class II DNA photolyase
(GI:5081541) [Chlamydomonas reinhardtii]; supporting
cDNA gi|2984706|gb|AF053365.1|AF053365
Length = 490
Score = 28.3 bits (60), Expect = 5.7
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = -3
Query: 725 RQSDSLV-RASSELTV-ERRSYRIVPMRTKRNRHDFTARKIRGRPENAGPD 579
R D +V R S L + E ++ +VPM ++ +++AR IRG+ PD
Sbjct: 134 RCKDEVVKRTSDSLAIHEVDAHNVVPMWAASSKLEYSARTIRGKINKLLPD 184
>At2g02800.2 68415.m00225 protein kinase (APK2b) identical to
protein kinase APK2b [Arabidopsis thaliana]
gi|2852449|dbj|BAA24695
Length = 426
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = -3
Query: 467 STRPGTGRIRFPSKPDTPRSSEPILIPKLRIQFA-DFPYLH 348
ST+PGTG ++ D+PR S ++ K +++ D P LH
Sbjct: 368 STKPGTGVGNRQAQIDSPRGSNGSIVQKSPRRYSYDRPLLH 408
>At2g02800.1 68415.m00224 protein kinase (APK2b) identical to
protein kinase APK2b [Arabidopsis thaliana]
gi|2852449|dbj|BAA24695
Length = 426
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = -3
Query: 467 STRPGTGRIRFPSKPDTPRSSEPILIPKLRIQFA-DFPYLH 348
ST+PGTG ++ D+PR S ++ K +++ D P LH
Sbjct: 368 STKPGTGVGNRQAQIDSPRGSNGSIVQKSPRRYSYDRPLLH 408
>At5g60000.1 68418.m07524 hypothetical protein
Length = 149
Score = 27.5 bits (58), Expect = 10.0
Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Frame = -1
Query: 334 RGSSPWRPAADMGTNRRDISTYIPHLNFKVRREYPD-TAANAVLFAFRTISPFYRIPWNS 158
+GS PW+P +GT R+ + + + D T + F FYR WN+
Sbjct: 78 QGSRPWQPRTCIGTFYREAHFGMHETPYVLYNSDKDATESKNSCFVVVKDDGFYR--WNN 135
Query: 157 NAQAEKKTLP 128
N + K P
Sbjct: 136 NKRIWDKVFP 145
>At5g22390.1 68418.m02612 expressed protein
Length = 202
Score = 27.5 bits (58), Expect = 10.0
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +2
Query: 119 ERSGKSFLFCLSVRVPWNPIEG 184
+ S KSFL LS PWNP +G
Sbjct: 17 DNSPKSFLDTLSSSSPWNPSKG 38
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,406,514
Number of Sequences: 28952
Number of extensions: 388139
Number of successful extensions: 1147
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1147
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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