Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1106
         (653 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0489 + 3776563-3776692,3776995-3777073,3777532-3777840,377...    28   7.5  
01_06_1087 - 34430521-34430899,34432336-34432806,34432926-344331...    28   7.5  
02_05_0602 + 30283893-30284170,30286259-30286305,30286534-302875...    27   9.9  

>11_01_0489 +
           3776563-3776692,3776995-3777073,3777532-3777840,
           3778828-3778898,3778975-3779213,3779306-3779383,
           3779734-3780156,3780416-3780661,3780886-3780978,
           3781480-3781527
          Length = 571

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 280 KSIVGTGYRGERLIEPSSSWFRPKFPSG 363
           + + GTG      + PSS+WF P+  SG
Sbjct: 12  RCVFGTGPLPPASLSPSSAWFDPELSSG 39


>01_06_1087 -
           34430521-34430899,34432336-34432806,34432926-34433112,
           34433470-34433599,34433794-34434125,34434566-34435050,
           34435185-34435752,34436579-34436640,34437569-34437636
          Length = 893

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = -1

Query: 461 KFENRLRSFRPQCL*SFALPDETVLKFYIDASYPEGNF-GRNQLLDGSISLSPLY 300
           K E  LRSF       + LP     K+ I A++  GN+ GRN    GS  L  L+
Sbjct: 93  KQEETLRSFPDGQRNCYTLPTNRSKKYLIRATFTYGNYDGRNSSESGSPFLFGLH 147


>02_05_0602 +
           30283893-30284170,30286259-30286305,30286534-30287510,
           30287611-30287920,30288561-30290197
          Length = 1082

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +1

Query: 190 KCWDPKDGELCLVRSKSGETLMRTVAILTCKSIVGTGYRGERLIEPSSSW 339
           KC+ P +  L ++R     T     A+    S+V   +RG  ++E  SSW
Sbjct: 672 KCFMPDELNLSIIRVLLALTA-HAKALAAVVSVVRENHRGHSIVELMSSW 720


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,126,229
Number of Sequences: 37544
Number of extensions: 394688
Number of successful extensions: 808
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)