Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1106
         (653 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g08480.1 68417.m01399 mitogen-activated protein kinase, putat...    30   1.2  
At3g07040.1 68416.m00836 disease resistance protein RPM1 (CC-NBS...    29   2.7  
At5g24850.1 68418.m02938 cryptochrome dash (CRYD) nearly identic...    28   6.2  
At5g57580.1 68418.m07194 calmodulin-binding protein similar to c...    27   8.2  
At1g74690.1 68414.m08650 calmodulin-binding family protein low s...    27   8.2  

>At4g08480.1 68417.m01399 mitogen-activated protein kinase, putative
           similar to mitogen-activated protein kinase [Arabidopsis
           thaliana] gi|1255448|dbj|BAA09057; contains Pfam
           PF00069: Protein kinase domain
          Length = 773

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/69 (24%), Positives = 30/69 (43%)
 Frame = -1

Query: 386 KFYIDASYPEGNFGRNQLLDGSISLSPLYPVPTIDLHVRIATVLIRVSPDFDLTRHSSPS 207
           K  +D+   E   G   +    +   P+  +P +DL      +L   +PD ++ R  S S
Sbjct: 375 KEVVDSGTVENRRGIKGVRPSVLKPPPVMKLPPVDLPGSSWDILTHFAPDSEIVRRPSSS 434

Query: 206 FGSQHLCSE 180
             S++ C E
Sbjct: 435 SSSENGCDE 443


>At3g07040.1 68416.m00836 disease resistance protein RPM1
           (CC-NBS-LRR class), putative domain signature CC-NBS-LRR
           exists, suggestive of a disease resistance protein.
           Identical to RPM1 (gi:1361985)
          Length = 926

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +2

Query: 353 FPQDSWRRYKILKQSHPVKRMIRGIGAETTSTYSQTLNG*ELRLTRTMKPEIDDG-AKWA 529
           FP+  W R+ I ++   V  MI+ I +++   Y  + N         + P IDDG AKW 
Sbjct: 104 FPRYMWARHSIAQKLGMVNVMIQSI-SDSMKRYYHSEN-----YQAALLPPIDDGDAKWV 157

Query: 530 N 532
           N
Sbjct: 158 N 158


>At5g24850.1 68418.m02938 cryptochrome dash (CRYD) nearly identical
           to cryptochrome dash [Arabidopsis thaliana] GI:28971609;
           similar to Deoxyribodipyrimidine photolyase (DNA
           photolyase) (Photoreactivating
           enzyme)(SP:Q55081){Synechocystis sp.}
          Length = 526

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = -2

Query: 304 YTQFRRSICTSESLRSSSGFPLT 236
           YTQFR+S+    S+RSS+  PL+
Sbjct: 195 YTQFRKSVEAKCSIRSSTRIPLS 217


>At5g57580.1 68418.m07194 calmodulin-binding protein similar to
           calmodulin-binding protein TCB60 GI:1698548 from
           [Nicotiana tabacum]
          Length = 647

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = +1

Query: 196 WDPKDGELCLVRSKSGETLMRTVAI-LTCKSIVGTGYRGERLIEPSSSWFRPK 351
           W  ++ E  +V+ +SG+  + T  + +T K  VGT   GE +   +SSW R +
Sbjct: 160 WTQEEFESHVVKERSGKRPLLTGEVYVTLKEGVGT--LGELVFTDNSSWIRSR 210


>At1g74690.1 68414.m08650 calmodulin-binding family protein low
           similarity to SF16 protein [Helianthus annuus]
           GI:560150; contains Pfam profile PF00612: IQ
           calmodulin-binding motif
          Length = 587

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -1

Query: 503 PASSFE*AGVLTHLKFENRLRSFR 432
           PAS+FE + V T  +FE   RSFR
Sbjct: 290 PASNFESSSVQTSFEFEKPKRSFR 313


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,352,548
Number of Sequences: 28952
Number of extensions: 308018
Number of successful extensions: 680
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)