Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1105
(264 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ415419-1|CAC94468.1| 441|Tribolium castaneum transcription fa... 21 2.2
AY600513-1|AAT11861.1| 314|Tribolium castaneum spalt-like prote... 19 9.0
>AJ415419-1|CAC94468.1| 441|Tribolium castaneum transcription
factor protein.
Length = 441
Score = 21.0 bits (42), Expect = 2.2
Identities = 9/29 (31%), Positives = 12/29 (41%)
Frame = +2
Query: 17 TMFSQSRRCFPSHDDVFPVTTMFSQSRRC 103
T +SQ F H ++P T Q C
Sbjct: 227 TQYSQYGSWFLPHQPIYPAVTATVQLSTC 255
Score = 21.0 bits (42), Expect = 2.2
Identities = 9/29 (31%), Positives = 12/29 (41%)
Frame = +1
Query: 37 TMFSQSRRCFPSHDDVFPVTTMFSQSRRC 123
T +SQ F H ++P T Q C
Sbjct: 227 TQYSQYGSWFLPHQPIYPAVTATVQLSTC 255
Score = 21.0 bits (42), Expect = 2.2
Identities = 9/29 (31%), Positives = 12/29 (41%)
Frame = +3
Query: 57 TMFSQSRRCFPSHDDVFPVTTMFSQSRRC 143
T +SQ F H ++P T Q C
Sbjct: 227 TQYSQYGSWFLPHQPIYPAVTATVQLSTC 255
Score = 21.0 bits (42), Expect = 2.2
Identities = 9/29 (31%), Positives = 12/29 (41%)
Frame = +2
Query: 77 TMFSQSRRCFPSHDDVFPVTTMFSQSRRC 163
T +SQ F H ++P T Q C
Sbjct: 227 TQYSQYGSWFLPHQPIYPAVTATVQLSTC 255
Score = 21.0 bits (42), Expect = 2.2
Identities = 9/29 (31%), Positives = 12/29 (41%)
Frame = +1
Query: 97 TMFSQSRRCFPSHDDVFPVTTMFSQSRRC 183
T +SQ F H ++P T Q C
Sbjct: 227 TQYSQYGSWFLPHQPIYPAVTATVQLSTC 255
Score = 21.0 bits (42), Expect = 2.2
Identities = 9/29 (31%), Positives = 12/29 (41%)
Frame = +3
Query: 117 TMFSQSRRCFPSHDDVFPVTTMFSQSRRC 203
T +SQ F H ++P T Q C
Sbjct: 227 TQYSQYGSWFLPHQPIYPAVTATVQLSTC 255
Score = 21.0 bits (42), Expect = 2.2
Identities = 9/29 (31%), Positives = 12/29 (41%)
Frame = +2
Query: 137 TMFSQSRRCFPSHDDVFPVTTMFSQSRRC 223
T +SQ F H ++P T Q C
Sbjct: 227 TQYSQYGSWFLPHQPIYPAVTATVQLSTC 255
Score = 21.0 bits (42), Expect = 2.2
Identities = 9/29 (31%), Positives = 12/29 (41%)
Frame = +1
Query: 157 TMFSQSRRCFPSHDDVFPVTTMFSQSRRC 243
T +SQ F H ++P T Q C
Sbjct: 227 TQYSQYGSWFLPHQPIYPAVTATVQLSTC 255
Score = 19.0 bits (37), Expect = 9.0
Identities = 8/27 (29%), Positives = 11/27 (40%)
Frame = +3
Query: 3 FSQSRRCFPSHDDVFPVTTMFSQSRRC 83
+SQ F H ++P T Q C
Sbjct: 229 YSQYGSWFLPHQPIYPAVTATVQLSTC 255
>AY600513-1|AAT11861.1| 314|Tribolium castaneum spalt-like protein
protein.
Length = 314
Score = 19.0 bits (37), Expect = 9.0
Identities = 6/17 (35%), Positives = 10/17 (58%)
Frame = -2
Query: 248 GKHRRDWENIVVTGKTS 198
G + WE+++ KTS
Sbjct: 99 GSNDNSWESLIEVTKTS 115
Score = 19.0 bits (37), Expect = 9.0
Identities = 6/17 (35%), Positives = 10/17 (58%)
Frame = -1
Query: 228 GKHRRDWENIVVTGKTS 178
G + WE+++ KTS
Sbjct: 99 GSNDNSWESLIEVTKTS 115
Score = 19.0 bits (37), Expect = 9.0
Identities = 6/17 (35%), Positives = 10/17 (58%)
Frame = -3
Query: 208 GKHRRDWENIVVTGKTS 158
G + WE+++ KTS
Sbjct: 99 GSNDNSWESLIEVTKTS 115
Score = 19.0 bits (37), Expect = 9.0
Identities = 6/17 (35%), Positives = 10/17 (58%)
Frame = -2
Query: 188 GKHRRDWENIVVTGKTS 138
G + WE+++ KTS
Sbjct: 99 GSNDNSWESLIEVTKTS 115
Score = 19.0 bits (37), Expect = 9.0
Identities = 6/17 (35%), Positives = 10/17 (58%)
Frame = -1
Query: 168 GKHRRDWENIVVTGKTS 118
G + WE+++ KTS
Sbjct: 99 GSNDNSWESLIEVTKTS 115
Score = 19.0 bits (37), Expect = 9.0
Identities = 6/17 (35%), Positives = 10/17 (58%)
Frame = -3
Query: 148 GKHRRDWENIVVTGKTS 98
G + WE+++ KTS
Sbjct: 99 GSNDNSWESLIEVTKTS 115
Score = 19.0 bits (37), Expect = 9.0
Identities = 6/17 (35%), Positives = 10/17 (58%)
Frame = -2
Query: 128 GKHRRDWENIVVTGKTS 78
G + WE+++ KTS
Sbjct: 99 GSNDNSWESLIEVTKTS 115
Score = 19.0 bits (37), Expect = 9.0
Identities = 6/17 (35%), Positives = 10/17 (58%)
Frame = -1
Query: 108 GKHRRDWENIVVTGKTS 58
G + WE+++ KTS
Sbjct: 99 GSNDNSWESLIEVTKTS 115
Score = 19.0 bits (37), Expect = 9.0
Identities = 6/17 (35%), Positives = 10/17 (58%)
Frame = -3
Query: 88 GKHRRDWENIVVTGKTS 38
G + WE+++ KTS
Sbjct: 99 GSNDNSWESLIEVTKTS 115
Score = 19.0 bits (37), Expect = 9.0
Identities = 6/17 (35%), Positives = 10/17 (58%)
Frame = -2
Query: 68 GKHRRDWENIVVTGKTS 18
G + WE+++ KTS
Sbjct: 99 GSNDNSWESLIEVTKTS 115
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,841
Number of Sequences: 336
Number of extensions: 1458
Number of successful extensions: 20
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 122,585
effective HSP length: 47
effective length of database: 106,793
effective search space used: 4271720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)
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