Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1105
(264 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 34 0.003
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 26 0.99
SPBC1604.10 |srb7|med21|mediator complex subunit Srb7 |Schizosac... 24 4.0
SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces ... 23 7.0
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 34.3 bits (75), Expect = 0.003
Identities = 17/59 (28%), Positives = 30/59 (50%)
Frame = +3
Query: 84 FPSHDDVFPVTTMFSQSRRCFPSHDDVFPVTTMFSQSRRCFPSHDDVFPVTTMFSQSDD 260
FP H V ++FS + P ++D+ +TT +++ SH+DV +F+ DD
Sbjct: 703 FPEHHPVLSTVSLFSDN----PMYEDLLALTTYLGPAKKPVASHEDVKRSGGLFAYFDD 757
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 25.8 bits (54), Expect = 0.99
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +1
Query: 4 FPSHDDVFPVTTMFSQSRRCFPSHDDVFPV 93
+PSHDD+F VT + F + + PV
Sbjct: 1434 YPSHDDLFDVTQLTEVLELVFNVYSEKTPV 1463
Score = 25.8 bits (54), Expect = 0.99
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +3
Query: 24 FPSHDDVFPVTTMFSQSRRCFPSHDDVFPV 113
+PSHDD+F VT + F + + PV
Sbjct: 1434 YPSHDDLFDVTQLTEVLELVFNVYSEKTPV 1463
Score = 25.8 bits (54), Expect = 0.99
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 44 FPSHDDVFPVTTMFSQSRRCFPSHDDVFPV 133
+PSHDD+F VT + F + + PV
Sbjct: 1434 YPSHDDLFDVTQLTEVLELVFNVYSEKTPV 1463
Score = 25.8 bits (54), Expect = 0.99
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +1
Query: 64 FPSHDDVFPVTTMFSQSRRCFPSHDDVFPV 153
+PSHDD+F VT + F + + PV
Sbjct: 1434 YPSHDDLFDVTQLTEVLELVFNVYSEKTPV 1463
Score = 25.8 bits (54), Expect = 0.99
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +3
Query: 84 FPSHDDVFPVTTMFSQSRRCFPSHDDVFPV 173
+PSHDD+F VT + F + + PV
Sbjct: 1434 YPSHDDLFDVTQLTEVLELVFNVYSEKTPV 1463
Score = 25.8 bits (54), Expect = 0.99
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 104 FPSHDDVFPVTTMFSQSRRCFPSHDDVFPV 193
+PSHDD+F VT + F + + PV
Sbjct: 1434 YPSHDDLFDVTQLTEVLELVFNVYSEKTPV 1463
Score = 25.8 bits (54), Expect = 0.99
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +1
Query: 124 FPSHDDVFPVTTMFSQSRRCFPSHDDVFPV 213
+PSHDD+F VT + F + + PV
Sbjct: 1434 YPSHDDLFDVTQLTEVLELVFNVYSEKTPV 1463
Score = 25.8 bits (54), Expect = 0.99
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +3
Query: 144 FPSHDDVFPVTTMFSQSRRCFPSHDDVFPV 233
+PSHDD+F VT + F + + PV
Sbjct: 1434 YPSHDDLFDVTQLTEVLELVFNVYSEKTPV 1463
Score = 25.8 bits (54), Expect = 0.99
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 164 FPSHDDVFPVTTMFSQSRRCFPSHDDVFPV 253
+PSHDD+F VT + F + + PV
Sbjct: 1434 YPSHDDLFDVTQLTEVLELVFNVYSEKTPV 1463
>SPBC1604.10 |srb7|med21|mediator complex subunit Srb7
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 138
Score = 23.8 bits (49), Expect = 4.0
Identities = 13/40 (32%), Positives = 15/40 (37%)
Frame = +3
Query: 138 RCFPSHDDVFPVTTMFSQSRRCFPSHDDVFPVTTMFSQSD 257
RC D + V T F S SH D P+ SD
Sbjct: 4 RCTQLQDTIDEVATQFYSSIHYLSSHHDFVPLPGQEKVSD 43
Score = 23.0 bits (47), Expect = 7.0
Identities = 11/32 (34%), Positives = 13/32 (40%)
Frame = +3
Query: 18 RCFPSHDDVFPVTTMFSQSRRCFPSHDDVFPV 113
RC D + V T F S SH D P+
Sbjct: 4 RCTQLQDTIDEVATQFYSSIHYLSSHHDFVPL 35
Score = 23.0 bits (47), Expect = 7.0
Identities = 11/32 (34%), Positives = 13/32 (40%)
Frame = +2
Query: 38 RCFPSHDDVFPVTTMFSQSRRCFPSHDDVFPV 133
RC D + V T F S SH D P+
Sbjct: 4 RCTQLQDTIDEVATQFYSSIHYLSSHHDFVPL 35
Score = 23.0 bits (47), Expect = 7.0
Identities = 11/32 (34%), Positives = 13/32 (40%)
Frame = +1
Query: 58 RCFPSHDDVFPVTTMFSQSRRCFPSHDDVFPV 153
RC D + V T F S SH D P+
Sbjct: 4 RCTQLQDTIDEVATQFYSSIHYLSSHHDFVPL 35
Score = 23.0 bits (47), Expect = 7.0
Identities = 11/32 (34%), Positives = 13/32 (40%)
Frame = +3
Query: 78 RCFPSHDDVFPVTTMFSQSRRCFPSHDDVFPV 173
RC D + V T F S SH D P+
Sbjct: 4 RCTQLQDTIDEVATQFYSSIHYLSSHHDFVPL 35
Score = 23.0 bits (47), Expect = 7.0
Identities = 11/32 (34%), Positives = 13/32 (40%)
Frame = +2
Query: 98 RCFPSHDDVFPVTTMFSQSRRCFPSHDDVFPV 193
RC D + V T F S SH D P+
Sbjct: 4 RCTQLQDTIDEVATQFYSSIHYLSSHHDFVPL 35
Score = 23.0 bits (47), Expect = 7.0
Identities = 11/32 (34%), Positives = 13/32 (40%)
Frame = +1
Query: 118 RCFPSHDDVFPVTTMFSQSRRCFPSHDDVFPV 213
RC D + V T F S SH D P+
Sbjct: 4 RCTQLQDTIDEVATQFYSSIHYLSSHHDFVPL 35
>SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 937
Score = 23.0 bits (47), Expect = 7.0
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -2
Query: 242 HRRDWENIVVTGKTSS*LGK 183
HRRD +VVTG T + G+
Sbjct: 359 HRRDGHYVVVTGITPTPFGE 378
Score = 23.0 bits (47), Expect = 7.0
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -1
Query: 222 HRRDWENIVVTGKTSS*LGK 163
HRRD +VVTG T + G+
Sbjct: 359 HRRDGHYVVVTGITPTPFGE 378
Score = 23.0 bits (47), Expect = 7.0
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 202 HRRDWENIVVTGKTSS*LGK 143
HRRD +VVTG T + G+
Sbjct: 359 HRRDGHYVVVTGITPTPFGE 378
Score = 23.0 bits (47), Expect = 7.0
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -2
Query: 182 HRRDWENIVVTGKTSS*LGK 123
HRRD +VVTG T + G+
Sbjct: 359 HRRDGHYVVVTGITPTPFGE 378
Score = 23.0 bits (47), Expect = 7.0
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -1
Query: 162 HRRDWENIVVTGKTSS*LGK 103
HRRD +VVTG T + G+
Sbjct: 359 HRRDGHYVVVTGITPTPFGE 378
Score = 23.0 bits (47), Expect = 7.0
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 142 HRRDWENIVVTGKTSS*LGK 83
HRRD +VVTG T + G+
Sbjct: 359 HRRDGHYVVVTGITPTPFGE 378
Score = 23.0 bits (47), Expect = 7.0
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -2
Query: 122 HRRDWENIVVTGKTSS*LGK 63
HRRD +VVTG T + G+
Sbjct: 359 HRRDGHYVVVTGITPTPFGE 378
Score = 23.0 bits (47), Expect = 7.0
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -1
Query: 102 HRRDWENIVVTGKTSS*LGK 43
HRRD +VVTG T + G+
Sbjct: 359 HRRDGHYVVVTGITPTPFGE 378
Score = 23.0 bits (47), Expect = 7.0
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 82 HRRDWENIVVTGKTSS*LGK 23
HRRD +VVTG T + G+
Sbjct: 359 HRRDGHYVVVTGITPTPFGE 378
Score = 23.0 bits (47), Expect = 7.0
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -2
Query: 62 HRRDWENIVVTGKTSS*LGK 3
HRRD +VVTG T + G+
Sbjct: 359 HRRDGHYVVVTGITPTPFGE 378
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,315,852
Number of Sequences: 5004
Number of extensions: 24569
Number of successful extensions: 114
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 53488084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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