Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1105
         (264 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0355 - 20577189-20577275,20578001-20578129,20578252-205783...    26   3.6  
10_01_0175 + 1959565-1960431,1960886-1960955,1961537-1961704,196...    25   8.3  
08_01_0704 + 6219530-6219609,6221595-6222243,6222339-6222437,622...    25   8.3  

>05_04_0355 -
           20577189-20577275,20578001-20578129,20578252-20578371,
           20578505-20578741,20578983-20579258,20579375-20579508,
           20580006-20581632
          Length = 869

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 253 DWENIVVTGKTSS*LGKHRRDWENIVVT 170
           DW+N V+T   +S +G H   W   +V+
Sbjct: 390 DWKNEVLTKVDASLVGTHMEPWSATIVS 417



 Score = 26.2 bits (55), Expect = 3.6
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 233 DWENIVVTGKTSS*LGKHRRDWENIVVT 150
           DW+N V+T   +S +G H   W   +V+
Sbjct: 390 DWKNEVLTKVDASLVGTHMEPWSATIVS 417



 Score = 26.2 bits (55), Expect = 3.6
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 213 DWENIVVTGKTSS*LGKHRRDWENIVVT 130
           DW+N V+T   +S +G H   W   +V+
Sbjct: 390 DWKNEVLTKVDASLVGTHMEPWSATIVS 417



 Score = 26.2 bits (55), Expect = 3.6
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 193 DWENIVVTGKTSS*LGKHRRDWENIVVT 110
           DW+N V+T   +S +G H   W   +V+
Sbjct: 390 DWKNEVLTKVDASLVGTHMEPWSATIVS 417



 Score = 26.2 bits (55), Expect = 3.6
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 173 DWENIVVTGKTSS*LGKHRRDWENIVVT 90
           DW+N V+T   +S +G H   W   +V+
Sbjct: 390 DWKNEVLTKVDASLVGTHMEPWSATIVS 417



 Score = 26.2 bits (55), Expect = 3.6
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 153 DWENIVVTGKTSS*LGKHRRDWENIVVT 70
           DW+N V+T   +S +G H   W   +V+
Sbjct: 390 DWKNEVLTKVDASLVGTHMEPWSATIVS 417



 Score = 26.2 bits (55), Expect = 3.6
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 133 DWENIVVTGKTSS*LGKHRRDWENIVVT 50
           DW+N V+T   +S +G H   W   +V+
Sbjct: 390 DWKNEVLTKVDASLVGTHMEPWSATIVS 417



 Score = 26.2 bits (55), Expect = 3.6
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 113 DWENIVVTGKTSS*LGKHRRDWENIVVT 30
           DW+N V+T   +S +G H   W   +V+
Sbjct: 390 DWKNEVLTKVDASLVGTHMEPWSATIVS 417



 Score = 26.2 bits (55), Expect = 3.6
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 93  DWENIVVTGKTSS*LGKHRRDWENIVVT 10
           DW+N V+T   +S +G H   W   +V+
Sbjct: 390 DWKNEVLTKVDASLVGTHMEPWSATIVS 417


>10_01_0175 +
           1959565-1960431,1960886-1960955,1961537-1961704,
           1962570-1962676
          Length = 403

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +3

Query: 147 PSHDDVFPVTTMFSQSRRCFPSHDDVFPVTTMFSQSDDV 263
           P H+++ P +T  S  R   P  +++ P    F   DD+
Sbjct: 226 PLHEELEPNSTAESSFRLLEPEEEEIHPPEIPFQFKDDL 264


>08_01_0704 + 6219530-6219609,6221595-6222243,6222339-6222437,
            6222521-6222616,6222750-6222848,6222929-6223027,
            6223811-6223882,6224508-6224597,6225173-6227329
          Length = 1146

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 18/50 (36%), Positives = 22/50 (44%)
 Frame = +3

Query: 108  PVTTMFSQSRRCFPSHDDVFPVTTMFSQSRRCFPSHDDVFPVTTMFSQSD 257
            PV    S   + FP HD   P +  +S S  CF S    F  T  F+Q D
Sbjct: 1078 PVLDDTSAVEQYFPQHDLNKPPSPDYSASPSCFSSS---FDNTRNFTQVD 1124


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,623,987
Number of Sequences: 37544
Number of extensions: 172339
Number of successful extensions: 501
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 14,793,348
effective HSP length: 66
effective length of database: 12,315,444
effective search space used: 258624324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)