Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1105
         (264 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK092650-1|BAC03936.1|  577|Homo sapiens protein ( Homo sapiens ...    34   0.071
X76785-1|CAA54181.1|  197|Homo sapiens hypothetical protein prot...    27   8.2  

>AK092650-1|BAC03936.1|  577|Homo sapiens protein ( Homo sapiens
           cDNA FLJ35331 fis, clone PROST2014659. ).
          Length = 577

 Score = 34.3 bits (75), Expect = 0.071
 Identities = 25/81 (30%), Positives = 30/81 (37%)
 Frame = +2

Query: 8   PVTTMFSQSRRCFPSHDDVFPVTTMFSQSRRCFPSHDDVFPVTTMFSQSRRCFPSHDDVF 187
           P+  M   S RC  S  D  P+  M   S RC  +  D  P+  M   S  C  S  D  
Sbjct: 252 PLHEMLLLSTRCSSSPPDAPPLHEMLLVSARCSSAPRDAPPLHRMLLVSAGCSSSPPDAP 311

Query: 188 PVTTMFSQSRRCFPSHDDVFP 250
            +  M   S  C  S  D  P
Sbjct: 312 RLRRMLLLSAGCSSSPPDTTP 332



 Score = 31.9 bits (69), Expect = 0.38
 Identities = 23/76 (30%), Positives = 29/76 (38%)
 Frame = +2

Query: 14  TTMFSQSRRCFPSHDDVFPVTTMFSQSRRCFPSHDDVFPVTTMFSQSRRCFPSHDDVFPV 193
           T +   +R    S  D  P+  M   S RC  S  D  P+  M   S RC  +  D  P+
Sbjct: 234 TLLLVSARHYSSSLPDAPPLHEMLLLSTRCSSSPPDAPPLHEMLLVSARCSSAPRDAPPL 293

Query: 194 TTMFSQSRRCFPSHDD 241
             M   S  C  S  D
Sbjct: 294 HRMLLVSAGCSSSPPD 309



 Score = 31.9 bits (69), Expect = 0.38
 Identities = 24/78 (30%), Positives = 29/78 (37%)
 Frame = +1

Query: 19  DVFPVTTMFSQSRRCFPSHDDVFPVTTMFSQSRRCFPSHDDVFPVTTMFSQSRRCFPSHD 198
           D  P+  M   S RC  S  D  P+  M   S RC  +  D  P+  M   S  C  S  
Sbjct: 249 DAPPLHEMLLLSTRCSSSPPDAPPLHEMLLVSARCSSAPRDAPPLHRMLLVSAGCSSSPP 308

Query: 199 DVFPVTTMFSQSRRCFPS 252
           D   +  M   S  C  S
Sbjct: 309 DAPRLRRMLLLSAGCSSS 326



 Score = 30.7 bits (66), Expect = 0.88
 Identities = 22/73 (30%), Positives = 28/73 (38%)
 Frame = +1

Query: 34  TTMFSQSRRCFPSHDDVFPVTTMFSQSRRCFPSHDDVFPVTTMFSQSRRCFPSHDDVFPV 213
           T +   +R    S  D  P+  M   S RC  S  D  P+  M   S RC  +  D  P+
Sbjct: 234 TLLLVSARHYSSSLPDAPPLHEMLLLSTRCSSSPPDAPPLHEMLLVSARCSSAPRDAPPL 293

Query: 214 TTMFSQSRRCFPS 252
             M   S  C  S
Sbjct: 294 HRMLLVSAGCSSS 306



 Score = 30.3 bits (65), Expect = 1.2
 Identities = 22/70 (31%), Positives = 27/70 (38%)
 Frame = +3

Query: 12  SRRCFPSHDDVFPVTTMFSQSRRCFPSHDDVFPVTTMFSQSRRCFPSHDDVFPVTTMFSQ 191
           +R    S  D  P+  M   S RC  S  D  P+  M   S RC  +  D  P+  M   
Sbjct: 240 ARHYSSSLPDAPPLHEMLLLSTRCSSSPPDAPPLHEMLLVSARCSSAPRDAPPLHRMLLV 299

Query: 192 SRRCFPSHDD 221
           S  C  S  D
Sbjct: 300 SAGCSSSPPD 309



 Score = 28.3 bits (60), Expect = 4.7
 Identities = 23/75 (30%), Positives = 28/75 (37%), Gaps = 1/75 (1%)
 Frame = +2

Query: 32  SRRCFPSHDDVFP-VTTMFSQSRRCFPSHDDVFPVTTMFSQSRRCFPSHDDVFPVTTMFS 208
           S RC  S     P +  M   S RC  S  D  P+  M   S RC  S      +  +  
Sbjct: 134 STRCSSSSPPDAPRLREMLLLSARCSSSPPDAPPLLEMLLLSSRCSSSPPAAPRLCRLLL 193

Query: 209 QSRRCFPSHDDVFPV 253
            S  CF S  D  P+
Sbjct: 194 VSAGCFSSPPDAPPL 208



 Score = 27.9 bits (59), Expect = 6.2
 Identities = 23/79 (29%), Positives = 29/79 (36%), Gaps = 2/79 (2%)
 Frame = +2

Query: 20  MFSQSRRCFPSHDDVFPVTTMFSQSRRCFPSHDDVFPVTTMFSQSRRCFPSHDDVFPV-- 193
           M   S RC  S  D  P+  M   S RC  S      +  +   S  CF S  D  P+  
Sbjct: 151 MLLLSARCSSSPPDAPPLLEMLLLSSRCSSSPPAAPRLCRLLLVSAGCFSSPPDAPPLCQ 210

Query: 194 TTMFSQSRRCFPSHDDVFP 250
           T +   +R    S  D  P
Sbjct: 211 TLLLVSARHYSSSPPDTTP 229



 Score = 27.5 bits (58), Expect = 8.2
 Identities = 22/75 (29%), Positives = 28/75 (37%), Gaps = 2/75 (2%)
 Frame = +3

Query: 12  SRRCFPSHDDVFPVTTMFSQSRRCFPSHDDVFPVTTMFSQSRRCFPSHDDVFPV--TTMF 185
           S RC  S  D  P+  M   S RC  S      +  +   S  CF S  D  P+  T + 
Sbjct: 155 SARCSSSPPDAPPLLEMLLLSSRCSSSPPAAPRLCRLLLVSAGCFSSPPDAPPLCQTLLL 214

Query: 186 SQSRRCFPSHDDVFP 230
             +R    S  D  P
Sbjct: 215 VSARHYSSSPPDTTP 229


>X76785-1|CAA54181.1|  197|Homo sapiens hypothetical protein
           protein.
          Length = 197

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 21/76 (27%), Positives = 32/76 (42%)
 Frame = +1

Query: 7   PSHDDVFPVTTMFSQSRRCFPSHDDVFPVTTMFSQSRRCFPSHDDVFPVTTMFSQSRRCF 186
           P H  +  VT  ++ S    P H  +  VT  +S S    P H  +  VT  +S S    
Sbjct: 31  PRHSALDLVTQPWTSSLSPGPPHSALVLVTQPWSSSLSPGPRHSALDLVTQPWSSSLSPG 90

Query: 187 PSHDDVFPVTTMFSQS 234
           P H  +  +T  ++ S
Sbjct: 91  PRHSALVLITQPWTSS 106



 Score = 27.5 bits (58), Expect = 8.2
 Identities = 21/76 (27%), Positives = 32/76 (42%)
 Frame = +3

Query: 27  PSHDDVFPVTTMFSQSRRCFPSHDDVFPVTTMFSQSRRCFPSHDDVFPVTTMFSQSRRCF 206
           P H  +  VT  ++ S    P H  +  VT  +S S    P H  +  VT  +S S    
Sbjct: 31  PRHSALDLVTQPWTSSLSPGPPHSALVLVTQPWSSSLSPGPRHSALDLVTQPWSSSLSPG 90

Query: 207 PSHDDVFPVTTMFSQS 254
           P H  +  +T  ++ S
Sbjct: 91  PRHSALVLITQPWTSS 106


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 42,229,686
Number of Sequences: 237096
Number of extensions: 794786
Number of successful extensions: 1938
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1833
length of database: 76,859,062
effective HSP length: 65
effective length of database: 61,447,822
effective search space used: 1351852084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)