Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1105
         (264 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT023389-1|AAY55805.1|  220|Drosophila melanogaster IP01869p pro...    45   2e-05
AE014296-3356|AAF51592.1| 2284|Drosophila melanogaster CG5847-PA...    33   0.042

>BT023389-1|AAY55805.1|  220|Drosophila melanogaster IP01869p
           protein.
          Length = 220

 Score = 44.8 bits (101), Expect = 2e-05
 Identities = 24/61 (39%), Positives = 28/61 (45%)
 Frame = +2

Query: 14  TTMFSQSRRCFPSHDDVFPVTTMFSQSRRCFPSHDDVFPVTTMFSQSRRCFPSHDDVFPV 193
           TTM    RRC   HDDV   TTM    RRC   HDDV       +  R   P+ + +  V
Sbjct: 31  TTMSRWPRRCHDGHDDVTMATTMSRWPRRCHDGHDDVTESCAKQTNFRLPSPNEEAIVDV 90

Query: 194 T 196
           T
Sbjct: 91  T 91



 Score = 44.8 bits (101), Expect = 2e-05
 Identities = 24/61 (39%), Positives = 28/61 (45%)
 Frame = +1

Query: 34  TTMFSQSRRCFPSHDDVFPVTTMFSQSRRCFPSHDDVFPVTTMFSQSRRCFPSHDDVFPV 213
           TTM    RRC   HDDV   TTM    RRC   HDDV       +  R   P+ + +  V
Sbjct: 31  TTMSRWPRRCHDGHDDVTMATTMSRWPRRCHDGHDDVTESCAKQTNFRLPSPNEEAIVDV 90

Query: 214 T 216
           T
Sbjct: 91  T 91



 Score = 44.8 bits (101), Expect = 2e-05
 Identities = 24/61 (39%), Positives = 28/61 (45%)
 Frame = +3

Query: 54  TTMFSQSRRCFPSHDDVFPVTTMFSQSRRCFPSHDDVFPVTTMFSQSRRCFPSHDDVFPV 233
           TTM    RRC   HDDV   TTM    RRC   HDDV       +  R   P+ + +  V
Sbjct: 31  TTMSRWPRRCHDGHDDVTMATTMSRWPRRCHDGHDDVTESCAKQTNFRLPSPNEEAIVDV 90

Query: 234 T 236
           T
Sbjct: 91  T 91



 Score = 42.7 bits (96), Expect = 7e-05
 Identities = 20/37 (54%), Positives = 20/37 (54%)
 Frame = +2

Query: 134 TTMFSQSRRCFPSHDDVFPVTTMFSQSRRCFPSHDDV 244
           TTM    RRC   HDDV   TTM    RRC   HDDV
Sbjct: 31  TTMSRWPRRCHDGHDDVTMATTMSRWPRRCHDGHDDV 67



 Score = 37.1 bits (82), Expect = 0.003
 Identities = 19/52 (36%), Positives = 23/52 (44%)
 Frame = +1

Query: 1   CFPSHDDVFPVTTMFSQSRRCFPSHDDVFPVTTMFSQSRRCFPSHDDVFPVT 156
           C   HDDV   TTM    RRC   HDDV       +  R   P+ + +  VT
Sbjct: 40  CHDGHDDVTMATTMSRWPRRCHDGHDDVTESCAKQTNFRLPSPNEEAIVDVT 91


>AE014296-3356|AAF51592.1| 2284|Drosophila melanogaster CG5847-PA
            protein.
          Length = 2284

 Score = 33.5 bits (73), Expect = 0.042
 Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 8/73 (10%)
 Frame = +1

Query: 7    PSHDDVFPVTTMFSQSRRCFP-SHDDVFPVTTMFSQSRRCFPSHDD-------VFPVTTM 162
            P+     P+TT+ +    C+P S D   P   + +   RC+P   D         P TT+
Sbjct: 1257 PTPTSTRPITTITTSKPNCYPGSTDRRCPQIPVTTTKPRCYPGSTDPQCQPATYLPPTTV 1316

Query: 163  FSQSRRCFPSHDD 201
             +   RC+P  +D
Sbjct: 1317 TTVRPRCYPGSND 1329


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,488,826
Number of Sequences: 53049
Number of extensions: 262292
Number of successful extensions: 566
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 24,988,368
effective HSP length: 66
effective length of database: 21,487,134
effective search space used: 451229814
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)